Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS37035

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS37030 and QEN71_RS37035 are separated by 494 nucleotidesQEN71_RS37035 and QEN71_RS37040 are separated by 15 nucleotidesQEN71_RS37040 and QEN71_RS37045 are separated by 92 nucleotides QEN71_RS37030: QEN71_RS37030 - peptidase S10, at 1,677,955 to 1,679,769 _RS37030 QEN71_RS37035: QEN71_RS37035 - ankyrin repeat domain-containing protein, at 1,680,264 to 1,680,932 _RS37035 QEN71_RS37040: QEN71_RS37040 - c-type cytochrome, at 1,680,948 to 1,681,487 _RS37040 QEN71_RS37045: QEN71_RS37045 - PQQ-binding-like beta-propeller repeat protein, at 1,681,580 to 1,683,313 _RS37045 Position (kb) 1680 1681Strain fitness (log2 ratio) -3 -2 -1 0 1at 1679.323 kb on - strand, within QEN71_RS37030at 1679.381 kb on + strand, within QEN71_RS37030at 1679.448 kb on - strand, within QEN71_RS37030at 1679.448 kb on - strand, within QEN71_RS37030at 1679.480 kb on + strand, within QEN71_RS37030at 1679.565 kb on - strand, within QEN71_RS37030at 1679.565 kb on - strand, within QEN71_RS37030at 1679.784 kb on + strandat 1679.785 kb on - strandat 1679.799 kb on + strandat 1679.800 kb on - strandat 1680.032 kb on - strandat 1680.204 kb on + strandat 1680.470 kb on + strand, within QEN71_RS37035at 1680.524 kb on - strand, within QEN71_RS37035at 1680.524 kb on - strand, within QEN71_RS37035at 1680.913 kb on + strandat 1680.914 kb on - strandat 1680.968 kb on - strandat 1680.968 kb on - strandat 1681.081 kb on + strand, within QEN71_RS37040at 1681.081 kb on + strand, within QEN71_RS37040at 1681.082 kb on - strand, within QEN71_RS37040at 1681.082 kb on - strand, within QEN71_RS37040at 1681.087 kb on + strand, within QEN71_RS37040at 1681.088 kb on - strand, within QEN71_RS37040at 1681.210 kb on + strand, within QEN71_RS37040at 1681.211 kb on - strand, within QEN71_RS37040at 1681.345 kb on + strand, within QEN71_RS37040at 1681.345 kb on + strand, within QEN71_RS37040at 1681.346 kb on - strand, within QEN71_RS37040at 1681.346 kb on - strand, within QEN71_RS37040at 1681.351 kb on + strand, within QEN71_RS37040at 1681.352 kb on - strand, within QEN71_RS37040at 1681.352 kb on - strand, within QEN71_RS37040at 1681.633 kb on + strandat 1681.634 kb on - strandat 1681.659 kb on + strandat 1681.660 kb on - strandat 1681.660 kb on - strandat 1681.678 kb on + strandat 1681.680 kb on + strandat 1681.681 kb on - strandat 1681.681 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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1,679,323 - QEN71_RS37030 0.75 -0.5
1,679,381 + QEN71_RS37030 0.79 +0.5
1,679,448 - QEN71_RS37030 0.82 -0.6
1,679,448 - QEN71_RS37030 0.82 -0.4
1,679,480 + QEN71_RS37030 0.84 -0.5
1,679,565 - QEN71_RS37030 0.89 +0.7
1,679,565 - QEN71_RS37030 0.89 -0.2
1,679,784 + +1.6
1,679,785 - -0.2
1,679,799 + -1.0
1,679,800 - -0.9
1,680,032 - +0.4
1,680,204 + +0.9
1,680,470 + QEN71_RS37035 0.31 +0.1
1,680,524 - QEN71_RS37035 0.39 -0.8
1,680,524 - QEN71_RS37035 0.39 -1.3
1,680,913 + -0.8
1,680,914 - -1.3
1,680,968 - -1.1
1,680,968 - -1.1
1,681,081 + QEN71_RS37040 0.25 +0.1
1,681,081 + QEN71_RS37040 0.25 -0.4
1,681,082 - QEN71_RS37040 0.25 +0.2
1,681,082 - QEN71_RS37040 0.25 -0.6
1,681,087 + QEN71_RS37040 0.26 +0.6
1,681,088 - QEN71_RS37040 0.26 +0.3
1,681,210 + QEN71_RS37040 0.49 +0.2
1,681,211 - QEN71_RS37040 0.49 +0.5
1,681,345 + QEN71_RS37040 0.74 +0.3
1,681,345 + QEN71_RS37040 0.74 -3.3
1,681,346 - QEN71_RS37040 0.74 +1.0
1,681,346 - QEN71_RS37040 0.74 +1.2
1,681,351 + QEN71_RS37040 0.75 -2.3
1,681,352 - QEN71_RS37040 0.75 -0.2
1,681,352 - QEN71_RS37040 0.75 +0.4
1,681,633 + -0.8
1,681,634 - -0.4
1,681,659 + -0.5
1,681,660 - -0.7
1,681,660 - +1.4
1,681,678 + +0.2
1,681,680 + -0.1
1,681,681 - -1.4
1,681,681 - +1.3

Or see this region's nucleotide sequence