Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS31730

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS31725 and QEN71_RS31730 are separated by 13 nucleotidesQEN71_RS31730 and QEN71_RS31735 are separated by 18 nucleotidesQEN71_RS31735 and QEN71_RS31740 are separated by 10 nucleotides QEN71_RS31725: QEN71_RS31725 - type VI secretion system ATPase TssH, at 464,586 to 467,240 _RS31725 QEN71_RS31730: QEN71_RS31730 - type VI secretion system protein TssA, at 467,254 to 468,384 _RS31730 QEN71_RS31735: QEN71_RS31735 - OmpA family protein, at 468,403 to 469,317 _RS31735 QEN71_RS31740: QEN71_RS31740 - type VI secretion system-associated protein TagF, at 469,328 to 470,317 _RS31740 Position (kb) 467 468 469Strain fitness (log2 ratio) -2 -1 0 1 2at 466.307 kb on + strand, within QEN71_RS31725at 466.496 kb on + strand, within QEN71_RS31725at 466.594 kb on - strand, within QEN71_RS31725at 466.648 kb on - strand, within QEN71_RS31725at 466.648 kb on - strand, within QEN71_RS31725at 466.694 kb on - strand, within QEN71_RS31725at 466.769 kb on + strand, within QEN71_RS31725at 466.770 kb on - strand, within QEN71_RS31725at 466.770 kb on - strand, within QEN71_RS31725at 466.770 kb on - strand, within QEN71_RS31725at 466.890 kb on + strand, within QEN71_RS31725at 466.890 kb on + strand, within QEN71_RS31725at 466.890 kb on + strand, within QEN71_RS31725at 466.890 kb on + strand, within QEN71_RS31725at 466.891 kb on - strand, within QEN71_RS31725at 466.891 kb on - strand, within QEN71_RS31725at 467.075 kb on + strandat 467.075 kb on + strandat 467.076 kb on - strandat 467.076 kb on - strandat 467.163 kb on - strandat 467.163 kb on - strandat 467.226 kb on + strandat 467.227 kb on - strandat 467.227 kb on - strandat 467.271 kb on + strandat 467.271 kb on + strandat 467.272 kb on - strandat 467.272 kb on - strandat 467.272 kb on - strandat 467.290 kb on - strandat 467.542 kb on + strand, within QEN71_RS31730at 467.542 kb on + strand, within QEN71_RS31730at 467.543 kb on - strand, within QEN71_RS31730at 467.652 kb on + strand, within QEN71_RS31730at 467.748 kb on + strand, within QEN71_RS31730at 467.749 kb on - strand, within QEN71_RS31730at 467.845 kb on + strand, within QEN71_RS31730at 467.845 kb on + strand, within QEN71_RS31730at 467.845 kb on + strand, within QEN71_RS31730at 467.846 kb on - strand, within QEN71_RS31730at 467.846 kb on - strand, within QEN71_RS31730at 467.962 kb on + strand, within QEN71_RS31730at 467.974 kb on + strand, within QEN71_RS31730at 467.974 kb on + strand, within QEN71_RS31730at 467.975 kb on - strand, within QEN71_RS31730at 468.016 kb on - strand, within QEN71_RS31730at 468.016 kb on - strand, within QEN71_RS31730at 468.024 kb on + strand, within QEN71_RS31730at 468.025 kb on - strand, within QEN71_RS31730at 468.025 kb on - strand, within QEN71_RS31730at 468.129 kb on + strand, within QEN71_RS31730at 468.129 kb on + strand, within QEN71_RS31730at 468.129 kb on + strand, within QEN71_RS31730at 468.129 kb on + strand, within QEN71_RS31730at 468.129 kb on + strand, within QEN71_RS31730at 468.129 kb on + strand, within QEN71_RS31730at 468.129 kb on + strand, within QEN71_RS31730at 468.130 kb on - strand, within QEN71_RS31730at 468.130 kb on - strand, within QEN71_RS31730at 468.130 kb on - strand, within QEN71_RS31730at 468.130 kb on - strand, within QEN71_RS31730at 468.138 kb on + strand, within QEN71_RS31730at 468.138 kb on + strand, within QEN71_RS31730at 468.139 kb on - strand, within QEN71_RS31730at 468.139 kb on - strand, within QEN71_RS31730at 468.139 kb on - strand, within QEN71_RS31730at 468.228 kb on + strand, within QEN71_RS31730at 468.229 kb on - strand, within QEN71_RS31730at 468.254 kb on - strand, within QEN71_RS31730at 468.254 kb on - strand, within QEN71_RS31730at 468.286 kb on - strandat 468.382 kb on + strandat 468.382 kb on + strandat 468.382 kb on + strandat 468.382 kb on + strandat 468.382 kb on + strandat 468.427 kb on - strandat 468.536 kb on + strand, within QEN71_RS31735at 468.536 kb on + strand, within QEN71_RS31735at 468.585 kb on + strand, within QEN71_RS31735at 468.585 kb on + strand, within QEN71_RS31735at 468.586 kb on - strand, within QEN71_RS31735at 468.600 kb on + strand, within QEN71_RS31735at 468.601 kb on - strand, within QEN71_RS31735at 468.645 kb on + strand, within QEN71_RS31735at 468.645 kb on + strand, within QEN71_RS31735at 468.794 kb on + strand, within QEN71_RS31735at 468.794 kb on + strand, within QEN71_RS31735at 468.794 kb on + strand, within QEN71_RS31735at 468.795 kb on - strand, within QEN71_RS31735at 468.795 kb on - strand, within QEN71_RS31735at 468.943 kb on + strand, within QEN71_RS31735at 468.943 kb on + strand, within QEN71_RS31735at 468.944 kb on - strand, within QEN71_RS31735at 468.944 kb on - strand, within QEN71_RS31735at 468.944 kb on - strand, within QEN71_RS31735at 468.944 kb on - strand, within QEN71_RS31735at 468.973 kb on + strand, within QEN71_RS31735at 468.974 kb on - strand, within QEN71_RS31735at 468.974 kb on - strand, within QEN71_RS31735at 468.974 kb on - strand, within QEN71_RS31735at 468.974 kb on - strand, within QEN71_RS31735at 468.974 kb on - strand, within QEN71_RS31735at 469.016 kb on + strand, within QEN71_RS31735at 469.016 kb on + strand, within QEN71_RS31735at 469.016 kb on + strand, within QEN71_RS31735at 469.016 kb on + strand, within QEN71_RS31735at 469.016 kb on + strand, within QEN71_RS31735at 469.017 kb on - strand, within QEN71_RS31735at 469.017 kb on - strand, within QEN71_RS31735at 469.017 kb on - strand, within QEN71_RS31735at 469.017 kb on - strand, within QEN71_RS31735at 469.017 kb on - strand, within QEN71_RS31735at 469.079 kb on - strand, within QEN71_RS31735at 469.084 kb on + strand, within QEN71_RS31735at 469.084 kb on + strand, within QEN71_RS31735at 469.084 kb on + strand, within QEN71_RS31735at 469.085 kb on - strand, within QEN71_RS31735at 469.085 kb on - strand, within QEN71_RS31735at 469.085 kb on - strand, within QEN71_RS31735at 469.085 kb on - strand, within QEN71_RS31735at 469.192 kb on - strand, within QEN71_RS31735at 469.192 kb on - strand, within QEN71_RS31735at 469.329 kb on + strandat 469.329 kb on + strandat 469.329 kb on + strandat 469.330 kb on - strandat 469.330 kb on - strandat 469.330 kb on - strandat 469.330 kb on - strandat 469.330 kb on - strandat 469.374 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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466,307 + QEN71_RS31725 0.65 -0.8
466,496 + QEN71_RS31725 0.72 -1.9
466,594 - QEN71_RS31725 0.76 -0.8
466,648 - QEN71_RS31725 0.78 -1.7
466,648 - QEN71_RS31725 0.78 +2.3
466,694 - QEN71_RS31725 0.79 +0.5
466,769 + QEN71_RS31725 0.82 +0.0
466,770 - QEN71_RS31725 0.82 -0.1
466,770 - QEN71_RS31725 0.82 +0.0
466,770 - QEN71_RS31725 0.82 -0.7
466,890 + QEN71_RS31725 0.87 -0.5
466,890 + QEN71_RS31725 0.87 +0.1
466,890 + QEN71_RS31725 0.87 -0.4
466,890 + QEN71_RS31725 0.87 -0.8
466,891 - QEN71_RS31725 0.87 +0.1
466,891 - QEN71_RS31725 0.87 -1.7
467,075 + -1.5
467,075 + +0.7
467,076 - -0.4
467,076 - -0.7
467,163 - +0.9
467,163 - -1.4
467,226 + -0.3
467,227 - -0.0
467,227 - +0.3
467,271 + -0.2
467,271 + +0.4
467,272 - -0.8
467,272 - -0.2
467,272 - -1.8
467,290 - +0.6
467,542 + QEN71_RS31730 0.25 +0.5
467,542 + QEN71_RS31730 0.25 -1.7
467,543 - QEN71_RS31730 0.26 -0.1
467,652 + QEN71_RS31730 0.35 -0.1
467,748 + QEN71_RS31730 0.44 +0.4
467,749 - QEN71_RS31730 0.44 +0.2
467,845 + QEN71_RS31730 0.52 +0.9
467,845 + QEN71_RS31730 0.52 -1.5
467,845 + QEN71_RS31730 0.52 -0.7
467,846 - QEN71_RS31730 0.52 -0.3
467,846 - QEN71_RS31730 0.52 -0.5
467,962 + QEN71_RS31730 0.63 -0.5
467,974 + QEN71_RS31730 0.64 +0.3
467,974 + QEN71_RS31730 0.64 -0.3
467,975 - QEN71_RS31730 0.64 +0.7
468,016 - QEN71_RS31730 0.67 -0.5
468,016 - QEN71_RS31730 0.67 -0.1
468,024 + QEN71_RS31730 0.68 -0.7
468,025 - QEN71_RS31730 0.68 -0.4
468,025 - QEN71_RS31730 0.68 +0.1
468,129 + QEN71_RS31730 0.77 +0.6
468,129 + QEN71_RS31730 0.77 +1.9
468,129 + QEN71_RS31730 0.77 +0.5
468,129 + QEN71_RS31730 0.77 +2.2
468,129 + QEN71_RS31730 0.77 +0.8
468,129 + QEN71_RS31730 0.77 -1.5
468,129 + QEN71_RS31730 0.77 -0.2
468,130 - QEN71_RS31730 0.77 -0.4
468,130 - QEN71_RS31730 0.77 +0.5
468,130 - QEN71_RS31730 0.77 -1.8
468,130 - QEN71_RS31730 0.77 +0.1
468,138 + QEN71_RS31730 0.78 -0.0
468,138 + QEN71_RS31730 0.78 +1.0
468,139 - QEN71_RS31730 0.78 -0.8
468,139 - QEN71_RS31730 0.78 -1.3
468,139 - QEN71_RS31730 0.78 -1.2
468,228 + QEN71_RS31730 0.86 -0.3
468,229 - QEN71_RS31730 0.86 +0.9
468,254 - QEN71_RS31730 0.88 -0.1
468,254 - QEN71_RS31730 0.88 -1.3
468,286 - +0.3
468,382 + -0.7
468,382 + -1.2
468,382 + -0.1
468,382 + -0.4
468,382 + -2.4
468,427 - -0.2
468,536 + QEN71_RS31735 0.15 -1.5
468,536 + QEN71_RS31735 0.15 -0.7
468,585 + QEN71_RS31735 0.20 +0.9
468,585 + QEN71_RS31735 0.20 -0.4
468,586 - QEN71_RS31735 0.20 +0.9
468,600 + QEN71_RS31735 0.22 +0.1
468,601 - QEN71_RS31735 0.22 +1.9
468,645 + QEN71_RS31735 0.26 -0.2
468,645 + QEN71_RS31735 0.26 +0.5
468,794 + QEN71_RS31735 0.43 +0.3
468,794 + QEN71_RS31735 0.43 +0.3
468,794 + QEN71_RS31735 0.43 -0.7
468,795 - QEN71_RS31735 0.43 +0.1
468,795 - QEN71_RS31735 0.43 +0.3
468,943 + QEN71_RS31735 0.59 +0.5
468,943 + QEN71_RS31735 0.59 +1.3
468,944 - QEN71_RS31735 0.59 +0.6
468,944 - QEN71_RS31735 0.59 -1.0
468,944 - QEN71_RS31735 0.59 +1.1
468,944 - QEN71_RS31735 0.59 +0.4
468,973 + QEN71_RS31735 0.62 +0.2
468,974 - QEN71_RS31735 0.62 -0.5
468,974 - QEN71_RS31735 0.62 -0.4
468,974 - QEN71_RS31735 0.62 -1.4
468,974 - QEN71_RS31735 0.62 +0.5
468,974 - QEN71_RS31735 0.62 -0.1
469,016 + QEN71_RS31735 0.67 -0.5
469,016 + QEN71_RS31735 0.67 -0.5
469,016 + QEN71_RS31735 0.67 -0.0
469,016 + QEN71_RS31735 0.67 +0.9
469,016 + QEN71_RS31735 0.67 -0.6
469,017 - QEN71_RS31735 0.67 +0.9
469,017 - QEN71_RS31735 0.67 -0.5
469,017 - QEN71_RS31735 0.67 +0.5
469,017 - QEN71_RS31735 0.67 -0.7
469,017 - QEN71_RS31735 0.67 +0.6
469,079 - QEN71_RS31735 0.74 +1.0
469,084 + QEN71_RS31735 0.74 -0.8
469,084 + QEN71_RS31735 0.74 -0.1
469,084 + QEN71_RS31735 0.74 -0.1
469,085 - QEN71_RS31735 0.75 +1.0
469,085 - QEN71_RS31735 0.75 -0.1
469,085 - QEN71_RS31735 0.75 +0.8
469,085 - QEN71_RS31735 0.75 -1.7
469,192 - QEN71_RS31735 0.86 -0.9
469,192 - QEN71_RS31735 0.86 -1.2
469,329 + -0.3
469,329 + +0.0
469,329 + -0.7
469,330 - +0.1
469,330 - -1.5
469,330 - -0.0
469,330 - -0.4
469,330 - -0.9
469,374 - -0.9

Or see this region's nucleotide sequence