Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS29160

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS29150 and QEN71_RS29155 are separated by 8 nucleotidesQEN71_RS29155 and QEN71_RS29160 are separated by 1 nucleotidesQEN71_RS29160 and QEN71_RS29165 overlap by 4 nucleotides QEN71_RS29150: QEN71_RS29150 - hypothetical protein, at 6,464,417 to 6,465,403 _RS29150 QEN71_RS29155: QEN71_RS29155 - WbqC family protein, at 6,465,412 to 6,466,131 _RS29155 QEN71_RS29160: QEN71_RS29160 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 6,466,133 to 6,467,314 _RS29160 QEN71_RS29165: QEN71_RS29165 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 6,467,311 to 6,468,507 _RS29165 Position (kb) 6466 6467 6468Strain fitness (log2 ratio) -1 0 1 2 3at 6465.174 kb on - strand, within QEN71_RS29150at 6465.243 kb on - strand, within QEN71_RS29150at 6465.243 kb on - strand, within QEN71_RS29150at 6465.363 kb on + strandat 6465.364 kb on - strandat 6465.515 kb on + strand, within QEN71_RS29155at 6465.515 kb on + strand, within QEN71_RS29155at 6465.530 kb on + strand, within QEN71_RS29155at 6465.531 kb on - strand, within QEN71_RS29155at 6465.531 kb on - strand, within QEN71_RS29155at 6465.626 kb on + strand, within QEN71_RS29155at 6465.627 kb on - strand, within QEN71_RS29155at 6465.627 kb on - strand, within QEN71_RS29155at 6465.722 kb on + strand, within QEN71_RS29155at 6465.722 kb on + strand, within QEN71_RS29155at 6465.722 kb on + strand, within QEN71_RS29155at 6465.723 kb on - strand, within QEN71_RS29155at 6465.744 kb on - strand, within QEN71_RS29155at 6465.744 kb on - strand, within QEN71_RS29155at 6465.744 kb on - strand, within QEN71_RS29155at 6465.842 kb on + strand, within QEN71_RS29155at 6465.842 kb on + strand, within QEN71_RS29155at 6465.842 kb on + strand, within QEN71_RS29155at 6465.845 kb on + strand, within QEN71_RS29155at 6465.845 kb on + strand, within QEN71_RS29155at 6465.845 kb on + strand, within QEN71_RS29155at 6465.845 kb on + strand, within QEN71_RS29155at 6465.845 kb on + strand, within QEN71_RS29155at 6465.845 kb on + strand, within QEN71_RS29155at 6465.846 kb on - strand, within QEN71_RS29155at 6465.846 kb on - strand, within QEN71_RS29155at 6465.846 kb on - strand, within QEN71_RS29155at 6465.846 kb on - strand, within QEN71_RS29155at 6465.913 kb on + strand, within QEN71_RS29155at 6465.971 kb on + strand, within QEN71_RS29155at 6465.972 kb on - strand, within QEN71_RS29155at 6465.972 kb on - strand, within QEN71_RS29155at 6465.972 kb on - strand, within QEN71_RS29155at 6466.032 kb on - strand, within QEN71_RS29155at 6466.048 kb on + strand, within QEN71_RS29155at 6466.048 kb on + strand, within QEN71_RS29155at 6466.094 kb on + strandat 6466.106 kb on + strandat 6466.106 kb on + strandat 6466.106 kb on + strandat 6466.107 kb on - strandat 6466.107 kb on - strandat 6466.107 kb on - strandat 6466.198 kb on + strandat 6466.199 kb on - strandat 6466.199 kb on - strandat 6466.199 kb on - strandat 6466.199 kb on - strandat 6466.263 kb on + strand, within QEN71_RS29160at 6466.263 kb on + strand, within QEN71_RS29160at 6466.263 kb on + strand, within QEN71_RS29160at 6466.270 kb on + strand, within QEN71_RS29160at 6466.404 kb on + strand, within QEN71_RS29160at 6466.405 kb on - strand, within QEN71_RS29160at 6466.405 kb on - strand, within QEN71_RS29160at 6466.488 kb on + strand, within QEN71_RS29160at 6466.488 kb on + strand, within QEN71_RS29160at 6466.489 kb on - strand, within QEN71_RS29160at 6466.623 kb on + strand, within QEN71_RS29160at 6466.623 kb on + strand, within QEN71_RS29160at 6466.624 kb on - strand, within QEN71_RS29160at 6466.624 kb on - strand, within QEN71_RS29160at 6466.624 kb on - strand, within QEN71_RS29160at 6466.624 kb on - strand, within QEN71_RS29160at 6466.800 kb on + strand, within QEN71_RS29160at 6466.801 kb on - strand, within QEN71_RS29160at 6466.801 kb on - strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.949 kb on + strand, within QEN71_RS29160at 6466.950 kb on - strand, within QEN71_RS29160at 6466.950 kb on - strand, within QEN71_RS29160at 6466.950 kb on - strand, within QEN71_RS29160at 6466.950 kb on - strand, within QEN71_RS29160at 6466.950 kb on - strand, within QEN71_RS29160at 6467.135 kb on + strand, within QEN71_RS29160at 6467.136 kb on - strand, within QEN71_RS29160at 6467.166 kb on + strand, within QEN71_RS29160at 6467.166 kb on + strand, within QEN71_RS29160at 6467.166 kb on + strand, within QEN71_RS29160at 6467.166 kb on + strand, within QEN71_RS29160at 6467.166 kb on + strand, within QEN71_RS29160at 6467.166 kb on + strand, within QEN71_RS29160at 6467.166 kb on + strand, within QEN71_RS29160at 6467.167 kb on - strand, within QEN71_RS29160at 6467.167 kb on - strand, within QEN71_RS29160at 6467.167 kb on - strand, within QEN71_RS29160at 6467.167 kb on - strand, within QEN71_RS29160at 6467.167 kb on - strand, within QEN71_RS29160at 6467.169 kb on + strand, within QEN71_RS29160at 6467.169 kb on + strand, within QEN71_RS29160at 6467.169 kb on + strand, within QEN71_RS29160at 6467.170 kb on - strand, within QEN71_RS29160at 6467.170 kb on - strand, within QEN71_RS29160at 6467.205 kb on + strandat 6467.206 kb on - strandat 6467.206 kb on - strandat 6467.321 kb on + strandat 6467.349 kb on + strandat 6467.349 kb on + strandat 6467.349 kb on + strandat 6467.349 kb on + strandat 6467.350 kb on - strandat 6467.350 kb on - strandat 6467.350 kb on - strandat 6467.477 kb on + strand, within QEN71_RS29165at 6467.510 kb on + strand, within QEN71_RS29165at 6467.510 kb on + strand, within QEN71_RS29165at 6467.510 kb on + strand, within QEN71_RS29165at 6467.510 kb on + strand, within QEN71_RS29165at 6467.510 kb on + strand, within QEN71_RS29165at 6467.510 kb on + strand, within QEN71_RS29165at 6467.510 kb on + strand, within QEN71_RS29165at 6467.510 kb on - strand, within QEN71_RS29165at 6467.511 kb on - strand, within QEN71_RS29165at 6467.511 kb on - strand, within QEN71_RS29165at 6467.511 kb on - strand, within QEN71_RS29165at 6467.511 kb on - strand, within QEN71_RS29165at 6467.511 kb on - strand, within QEN71_RS29165at 6467.513 kb on + strand, within QEN71_RS29165at 6467.513 kb on + strand, within QEN71_RS29165at 6467.514 kb on - strand, within QEN71_RS29165at 6467.514 kb on - strand, within QEN71_RS29165at 6467.514 kb on - strand, within QEN71_RS29165at 6467.514 kb on - strand, within QEN71_RS29165at 6467.610 kb on - strand, within QEN71_RS29165at 6467.678 kb on + strand, within QEN71_RS29165at 6467.679 kb on - strand, within QEN71_RS29165at 6467.708 kb on - strand, within QEN71_RS29165at 6467.779 kb on - strand, within QEN71_RS29165at 6467.870 kb on + strand, within QEN71_RS29165at 6467.871 kb on - strand, within QEN71_RS29165at 6467.871 kb on - strand, within QEN71_RS29165at 6467.891 kb on - strand, within QEN71_RS29165at 6467.958 kb on - strand, within QEN71_RS29165at 6468.061 kb on + strand, within QEN71_RS29165at 6468.061 kb on + strand, within QEN71_RS29165at 6468.061 kb on + strand, within QEN71_RS29165at 6468.061 kb on + strand, within QEN71_RS29165at 6468.061 kb on + strand, within QEN71_RS29165at 6468.061 kb on + strand, within QEN71_RS29165at 6468.062 kb on - strand, within QEN71_RS29165at 6468.062 kb on - strand, within QEN71_RS29165at 6468.062 kb on - strand, within QEN71_RS29165at 6468.062 kb on - strand, within QEN71_RS29165at 6468.062 kb on - strand, within QEN71_RS29165at 6468.062 kb on - strand, within QEN71_RS29165at 6468.062 kb on - strand, within QEN71_RS29165at 6468.198 kb on - strand, within QEN71_RS29165at 6468.198 kb on - strand, within QEN71_RS29165

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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6,465,174 - QEN71_RS29150 0.77 +0.3
6,465,243 - QEN71_RS29150 0.84 +0.0
6,465,243 - QEN71_RS29150 0.84 +0.0
6,465,363 + -0.9
6,465,364 - +0.7
6,465,515 + QEN71_RS29155 0.14 +0.1
6,465,515 + QEN71_RS29155 0.14 +0.6
6,465,530 + QEN71_RS29155 0.16 -0.7
6,465,531 - QEN71_RS29155 0.17 -0.7
6,465,531 - QEN71_RS29155 0.17 +1.2
6,465,626 + QEN71_RS29155 0.30 +0.8
6,465,627 - QEN71_RS29155 0.30 +0.2
6,465,627 - QEN71_RS29155 0.30 -0.2
6,465,722 + QEN71_RS29155 0.43 +0.6
6,465,722 + QEN71_RS29155 0.43 +1.2
6,465,722 + QEN71_RS29155 0.43 +0.6
6,465,723 - QEN71_RS29155 0.43 +1.0
6,465,744 - QEN71_RS29155 0.46 -0.9
6,465,744 - QEN71_RS29155 0.46 -0.2
6,465,744 - QEN71_RS29155 0.46 +0.4
6,465,842 + QEN71_RS29155 0.60 -0.4
6,465,842 + QEN71_RS29155 0.60 -0.8
6,465,842 + QEN71_RS29155 0.60 -1.4
6,465,845 + QEN71_RS29155 0.60 +0.1
6,465,845 + QEN71_RS29155 0.60 +0.6
6,465,845 + QEN71_RS29155 0.60 +1.2
6,465,845 + QEN71_RS29155 0.60 +0.5
6,465,845 + QEN71_RS29155 0.60 -0.4
6,465,845 + QEN71_RS29155 0.60 -1.1
6,465,846 - QEN71_RS29155 0.60 +1.4
6,465,846 - QEN71_RS29155 0.60 +0.7
6,465,846 - QEN71_RS29155 0.60 +0.9
6,465,846 - QEN71_RS29155 0.60 +0.9
6,465,913 + QEN71_RS29155 0.70 +1.2
6,465,971 + QEN71_RS29155 0.78 +1.4
6,465,972 - QEN71_RS29155 0.78 +1.3
6,465,972 - QEN71_RS29155 0.78 +0.7
6,465,972 - QEN71_RS29155 0.78 -1.6
6,466,032 - QEN71_RS29155 0.86 +0.6
6,466,048 + QEN71_RS29155 0.88 +0.7
6,466,048 + QEN71_RS29155 0.88 +0.0
6,466,094 + +0.1
6,466,106 + +0.9
6,466,106 + -0.1
6,466,106 + +1.0
6,466,107 - +2.4
6,466,107 - +0.1
6,466,107 - +1.0
6,466,198 + +2.9
6,466,199 - -0.3
6,466,199 - +0.0
6,466,199 - +0.5
6,466,199 - +0.1
6,466,263 + QEN71_RS29160 0.11 +0.9
6,466,263 + QEN71_RS29160 0.11 +0.7
6,466,263 + QEN71_RS29160 0.11 -1.3
6,466,270 + QEN71_RS29160 0.12 -0.4
6,466,404 + QEN71_RS29160 0.23 +0.7
6,466,405 - QEN71_RS29160 0.23 +0.6
6,466,405 - QEN71_RS29160 0.23 +0.4
6,466,488 + QEN71_RS29160 0.30 +1.2
6,466,488 + QEN71_RS29160 0.30 +1.1
6,466,489 - QEN71_RS29160 0.30 +0.9
6,466,623 + QEN71_RS29160 0.41 -1.4
6,466,623 + QEN71_RS29160 0.41 +2.2
6,466,624 - QEN71_RS29160 0.42 +0.5
6,466,624 - QEN71_RS29160 0.42 +0.6
6,466,624 - QEN71_RS29160 0.42 -0.4
6,466,624 - QEN71_RS29160 0.42 -1.6
6,466,800 + QEN71_RS29160 0.56 +0.9
6,466,801 - QEN71_RS29160 0.57 +2.3
6,466,801 - QEN71_RS29160 0.57 +0.7
6,466,949 + QEN71_RS29160 0.69 +1.6
6,466,949 + QEN71_RS29160 0.69 +0.7
6,466,949 + QEN71_RS29160 0.69 +0.1
6,466,949 + QEN71_RS29160 0.69 +0.4
6,466,949 + QEN71_RS29160 0.69 -1.1
6,466,949 + QEN71_RS29160 0.69 -0.1
6,466,949 + QEN71_RS29160 0.69 +0.8
6,466,949 + QEN71_RS29160 0.69 -0.2
6,466,949 + QEN71_RS29160 0.69 +0.4
6,466,949 + QEN71_RS29160 0.69 +0.2
6,466,949 + QEN71_RS29160 0.69 +0.2
6,466,949 + QEN71_RS29160 0.69 +0.6
6,466,949 + QEN71_RS29160 0.69 +0.9
6,466,950 - QEN71_RS29160 0.69 +0.2
6,466,950 - QEN71_RS29160 0.69 +0.3
6,466,950 - QEN71_RS29160 0.69 +0.9
6,466,950 - QEN71_RS29160 0.69 +2.7
6,466,950 - QEN71_RS29160 0.69 +0.5
6,467,135 + QEN71_RS29160 0.85 +0.3
6,467,136 - QEN71_RS29160 0.85 +0.1
6,467,166 + QEN71_RS29160 0.87 +0.3
6,467,166 + QEN71_RS29160 0.87 +0.5
6,467,166 + QEN71_RS29160 0.87 -1.3
6,467,166 + QEN71_RS29160 0.87 -0.9
6,467,166 + QEN71_RS29160 0.87 +1.6
6,467,166 + QEN71_RS29160 0.87 +1.3
6,467,166 + QEN71_RS29160 0.87 -1.3
6,467,167 - QEN71_RS29160 0.87 +0.4
6,467,167 - QEN71_RS29160 0.87 -0.4
6,467,167 - QEN71_RS29160 0.87 -1.4
6,467,167 - QEN71_RS29160 0.87 +0.3
6,467,167 - QEN71_RS29160 0.87 +1.8
6,467,169 + QEN71_RS29160 0.88 -0.0
6,467,169 + QEN71_RS29160 0.88 +0.4
6,467,169 + QEN71_RS29160 0.88 -0.5
6,467,170 - QEN71_RS29160 0.88 +0.1
6,467,170 - QEN71_RS29160 0.88 +0.5
6,467,205 + -0.7
6,467,206 - +1.2
6,467,206 - +1.3
6,467,321 + -1.1
6,467,349 + -0.1
6,467,349 + +0.6
6,467,349 + +0.2
6,467,349 + +0.4
6,467,350 - +0.2
6,467,350 - +0.3
6,467,350 - -0.9
6,467,477 + QEN71_RS29165 0.14 +1.0
6,467,510 + QEN71_RS29165 0.17 +0.6
6,467,510 + QEN71_RS29165 0.17 +0.2
6,467,510 + QEN71_RS29165 0.17 +0.9
6,467,510 + QEN71_RS29165 0.17 -0.4
6,467,510 + QEN71_RS29165 0.17 +0.3
6,467,510 + QEN71_RS29165 0.17 +0.6
6,467,510 + QEN71_RS29165 0.17 +1.7
6,467,510 - QEN71_RS29165 0.17 +0.8
6,467,511 - QEN71_RS29165 0.17 +0.8
6,467,511 - QEN71_RS29165 0.17 -0.7
6,467,511 - QEN71_RS29165 0.17 +0.4
6,467,511 - QEN71_RS29165 0.17 +0.4
6,467,511 - QEN71_RS29165 0.17 +0.5
6,467,513 + QEN71_RS29165 0.17 +0.8
6,467,513 + QEN71_RS29165 0.17 -0.1
6,467,514 - QEN71_RS29165 0.17 -0.9
6,467,514 - QEN71_RS29165 0.17 +0.4
6,467,514 - QEN71_RS29165 0.17 -0.5
6,467,514 - QEN71_RS29165 0.17 -0.3
6,467,610 - QEN71_RS29165 0.25 +1.1
6,467,678 + QEN71_RS29165 0.31 +1.1
6,467,679 - QEN71_RS29165 0.31 +0.8
6,467,708 - QEN71_RS29165 0.33 +0.3
6,467,779 - QEN71_RS29165 0.39 -0.0
6,467,870 + QEN71_RS29165 0.47 +2.1
6,467,871 - QEN71_RS29165 0.47 +1.0
6,467,871 - QEN71_RS29165 0.47 +0.6
6,467,891 - QEN71_RS29165 0.48 -0.2
6,467,958 - QEN71_RS29165 0.54 +1.3
6,468,061 + QEN71_RS29165 0.63 +0.5
6,468,061 + QEN71_RS29165 0.63 -1.3
6,468,061 + QEN71_RS29165 0.63 +0.7
6,468,061 + QEN71_RS29165 0.63 +0.6
6,468,061 + QEN71_RS29165 0.63 -0.2
6,468,061 + QEN71_RS29165 0.63 +0.8
6,468,062 - QEN71_RS29165 0.63 -0.1
6,468,062 - QEN71_RS29165 0.63 -0.1
6,468,062 - QEN71_RS29165 0.63 +0.4
6,468,062 - QEN71_RS29165 0.63 +0.7
6,468,062 - QEN71_RS29165 0.63 -0.0
6,468,062 - QEN71_RS29165 0.63 +0.5
6,468,062 - QEN71_RS29165 0.63 +0.8
6,468,198 - QEN71_RS29165 0.74 -0.5
6,468,198 - QEN71_RS29165 0.74 +0.2

Or see this region's nucleotide sequence