Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS28550

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS28545 and QEN71_RS28550 are separated by 347 nucleotidesQEN71_RS28550 and QEN71_RS28555 are separated by 278 nucleotides QEN71_RS28545: QEN71_RS28545 - YbfB/YjiJ family MFS transporter, at 6,330,216 to 6,331,391 _RS28545 QEN71_RS28550: QEN71_RS28550 - diguanylate cyclase, at 6,331,739 to 6,333,349 _RS28550 QEN71_RS28555: QEN71_RS28555 - GGDEF domain-containing protein, at 6,333,628 to 6,334,578 _RS28555 Position (kb) 6331 6332 6333 6334Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 6330.769 kb on + strand, within QEN71_RS28545at 6330.769 kb on + strand, within QEN71_RS28545at 6330.769 kb on + strand, within QEN71_RS28545at 6330.770 kb on - strand, within QEN71_RS28545at 6330.770 kb on - strand, within QEN71_RS28545at 6330.824 kb on + strand, within QEN71_RS28545at 6330.824 kb on + strand, within QEN71_RS28545at 6330.824 kb on + strand, within QEN71_RS28545at 6330.825 kb on - strand, within QEN71_RS28545at 6330.825 kb on - strand, within QEN71_RS28545at 6331.012 kb on + strand, within QEN71_RS28545at 6331.012 kb on + strand, within QEN71_RS28545at 6331.013 kb on - strand, within QEN71_RS28545at 6331.013 kb on - strand, within QEN71_RS28545at 6331.015 kb on + strand, within QEN71_RS28545at 6331.015 kb on + strand, within QEN71_RS28545at 6331.015 kb on + strand, within QEN71_RS28545at 6331.015 kb on + strand, within QEN71_RS28545at 6331.015 kb on + strand, within QEN71_RS28545at 6331.015 kb on + strand, within QEN71_RS28545at 6331.015 kb on + strand, within QEN71_RS28545at 6331.015 kb on + strand, within QEN71_RS28545at 6331.015 kb on + strand, within QEN71_RS28545at 6331.016 kb on - strand, within QEN71_RS28545at 6331.016 kb on - strand, within QEN71_RS28545at 6331.094 kb on + strand, within QEN71_RS28545at 6331.094 kb on + strand, within QEN71_RS28545at 6331.094 kb on + strand, within QEN71_RS28545at 6331.095 kb on - strand, within QEN71_RS28545at 6331.095 kb on - strand, within QEN71_RS28545at 6331.095 kb on - strand, within QEN71_RS28545at 6331.283 kb on + strandat 6331.283 kb on + strandat 6331.284 kb on - strandat 6331.284 kb on - strandat 6331.351 kb on + strandat 6331.351 kb on + strandat 6331.352 kb on - strandat 6331.457 kb on + strandat 6331.458 kb on - strandat 6331.580 kb on + strandat 6331.580 kb on + strandat 6331.581 kb on - strandat 6331.597 kb on - strandat 6331.604 kb on + strandat 6331.604 kb on + strandat 6331.604 kb on + strandat 6331.604 kb on + strandat 6331.604 kb on + strandat 6331.604 kb on + strandat 6331.604 kb on + strandat 6331.604 kb on + strandat 6331.604 kb on + strandat 6331.604 kb on + strandat 6331.605 kb on - strandat 6331.605 kb on - strandat 6331.605 kb on - strandat 6331.605 kb on - strandat 6331.605 kb on - strandat 6331.605 kb on - strandat 6331.605 kb on - strandat 6331.605 kb on - strandat 6331.605 kb on - strandat 6331.647 kb on + strandat 6331.648 kb on - strandat 6331.692 kb on + strandat 6331.692 kb on + strandat 6331.693 kb on - strandat 6331.693 kb on - strandat 6331.693 kb on - strandat 6331.693 kb on - strandat 6331.693 kb on - strandat 6331.780 kb on + strandat 6331.780 kb on + strandat 6331.898 kb on + strandat 6331.898 kb on + strandat 6331.994 kb on + strand, within QEN71_RS28550at 6331.995 kb on - strand, within QEN71_RS28550at 6331.995 kb on - strand, within QEN71_RS28550at 6331.995 kb on - strand, within QEN71_RS28550at 6331.995 kb on - strand, within QEN71_RS28550at 6332.105 kb on + strand, within QEN71_RS28550at 6332.105 kb on + strand, within QEN71_RS28550at 6332.120 kb on + strand, within QEN71_RS28550at 6332.120 kb on + strand, within QEN71_RS28550at 6332.120 kb on + strand, within QEN71_RS28550at 6332.120 kb on + strand, within QEN71_RS28550at 6332.120 kb on + strand, within QEN71_RS28550at 6332.121 kb on - strand, within QEN71_RS28550at 6332.121 kb on - strand, within QEN71_RS28550at 6332.121 kb on - strand, within QEN71_RS28550at 6332.121 kb on - strand, within QEN71_RS28550at 6332.121 kb on - strand, within QEN71_RS28550at 6332.121 kb on - strand, within QEN71_RS28550at 6332.121 kb on - strand, within QEN71_RS28550at 6332.121 kb on - strand, within QEN71_RS28550at 6332.121 kb on - strand, within QEN71_RS28550at 6332.121 kb on - strand, within QEN71_RS28550at 6332.201 kb on + strand, within QEN71_RS28550at 6332.201 kb on + strand, within QEN71_RS28550at 6332.202 kb on - strand, within QEN71_RS28550at 6332.202 kb on - strand, within QEN71_RS28550at 6332.206 kb on + strand, within QEN71_RS28550at 6332.206 kb on + strand, within QEN71_RS28550at 6332.207 kb on - strand, within QEN71_RS28550at 6332.207 kb on - strand, within QEN71_RS28550at 6332.207 kb on - strand, within QEN71_RS28550at 6332.207 kb on - strand, within QEN71_RS28550at 6332.363 kb on + strand, within QEN71_RS28550at 6332.363 kb on + strand, within QEN71_RS28550at 6332.363 kb on + strand, within QEN71_RS28550at 6332.364 kb on - strand, within QEN71_RS28550at 6332.456 kb on + strand, within QEN71_RS28550at 6332.457 kb on - strand, within QEN71_RS28550at 6332.457 kb on - strand, within QEN71_RS28550at 6332.457 kb on - strand, within QEN71_RS28550at 6332.457 kb on - strand, within QEN71_RS28550at 6332.457 kb on - strand, within QEN71_RS28550at 6332.482 kb on + strand, within QEN71_RS28550at 6332.482 kb on + strand, within QEN71_RS28550at 6332.482 kb on + strand, within QEN71_RS28550at 6332.534 kb on + strand, within QEN71_RS28550at 6332.534 kb on + strand, within QEN71_RS28550at 6332.534 kb on + strand, within QEN71_RS28550at 6332.534 kb on + strand, within QEN71_RS28550at 6332.534 kb on + strand, within QEN71_RS28550at 6332.534 kb on + strand, within QEN71_RS28550at 6332.534 kb on + strand, within QEN71_RS28550at 6332.534 kb on + strand, within QEN71_RS28550at 6332.534 kb on + strand, within QEN71_RS28550at 6332.534 kb on + strand, within QEN71_RS28550at 6332.534 kb on + strand, within QEN71_RS28550at 6332.534 kb on + strand, within QEN71_RS28550at 6332.535 kb on - strand, within QEN71_RS28550at 6332.535 kb on - strand, within QEN71_RS28550at 6332.535 kb on - strand, within QEN71_RS28550at 6332.535 kb on - strand, within QEN71_RS28550at 6332.535 kb on - strand, within QEN71_RS28550at 6332.535 kb on - strand, within QEN71_RS28550at 6332.580 kb on - strand, within QEN71_RS28550at 6332.924 kb on + strand, within QEN71_RS28550at 6332.924 kb on + strand, within QEN71_RS28550at 6332.924 kb on + strand, within QEN71_RS28550at 6332.924 kb on + strand, within QEN71_RS28550at 6332.924 kb on + strand, within QEN71_RS28550at 6332.924 kb on + strand, within QEN71_RS28550at 6332.924 kb on + strand, within QEN71_RS28550at 6332.924 kb on + strand, within QEN71_RS28550at 6332.924 kb on + strand, within QEN71_RS28550at 6332.925 kb on - strand, within QEN71_RS28550at 6332.925 kb on - strand, within QEN71_RS28550at 6332.925 kb on - strand, within QEN71_RS28550at 6332.925 kb on - strand, within QEN71_RS28550at 6333.178 kb on + strand, within QEN71_RS28550at 6333.178 kb on + strand, within QEN71_RS28550at 6333.179 kb on - strand, within QEN71_RS28550at 6333.179 kb on - strand, within QEN71_RS28550at 6333.179 kb on - strand, within QEN71_RS28550at 6333.179 kb on - strand, within QEN71_RS28550at 6333.179 kb on - strand, within QEN71_RS28550at 6333.179 kb on - strand, within QEN71_RS28550at 6333.218 kb on + strandat 6333.218 kb on + strandat 6333.218 kb on + strandat 6333.218 kb on + strandat 6333.219 kb on - strandat 6333.347 kb on + strandat 6333.347 kb on + strandat 6333.347 kb on + strandat 6333.347 kb on + strandat 6333.347 kb on + strandat 6333.347 kb on + strandat 6333.347 kb on + strandat 6333.348 kb on - strandat 6333.348 kb on - strandat 6333.348 kb on - strandat 6333.348 kb on - strandat 6333.348 kb on - strandat 6333.419 kb on + strandat 6333.419 kb on + strandat 6333.419 kb on + strandat 6333.419 kb on + strandat 6333.419 kb on + strandat 6333.419 kb on + strandat 6333.419 kb on + strandat 6333.420 kb on - strandat 6333.420 kb on - strandat 6333.420 kb on - strandat 6333.420 kb on - strandat 6333.420 kb on - strandat 6333.420 kb on - strandat 6333.420 kb on - strandat 6333.420 kb on - strandat 6333.420 kb on - strandat 6333.451 kb on + strandat 6333.451 kb on + strandat 6333.451 kb on + strandat 6333.451 kb on + strandat 6333.451 kb on + strandat 6333.451 kb on + strandat 6333.451 kb on + strandat 6333.451 kb on + strandat 6333.452 kb on - strandat 6333.452 kb on - strandat 6333.452 kb on - strandat 6333.452 kb on - strandat 6333.452 kb on - strandat 6333.544 kb on - strandat 6333.623 kb on - strandat 6333.623 kb on - strandat 6333.623 kb on - strandat 6333.623 kb on - strandat 6333.718 kb on + strandat 6333.718 kb on + strandat 6333.718 kb on + strandat 6333.718 kb on + strandat 6333.719 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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6,330,769 + QEN71_RS28545 0.47 +0.1
6,330,769 + QEN71_RS28545 0.47 +0.5
6,330,769 + QEN71_RS28545 0.47 +0.3
6,330,770 - QEN71_RS28545 0.47 +0.1
6,330,770 - QEN71_RS28545 0.47 +0.5
6,330,824 + QEN71_RS28545 0.52 +0.4
6,330,824 + QEN71_RS28545 0.52 -0.2
6,330,824 + QEN71_RS28545 0.52 -1.7
6,330,825 - QEN71_RS28545 0.52 +0.1
6,330,825 - QEN71_RS28545 0.52 +1.6
6,331,012 + QEN71_RS28545 0.68 +0.5
6,331,012 + QEN71_RS28545 0.68 -0.0
6,331,013 - QEN71_RS28545 0.68 +0.1
6,331,013 - QEN71_RS28545 0.68 +1.1
6,331,015 + QEN71_RS28545 0.68 -1.3
6,331,015 + QEN71_RS28545 0.68 +0.7
6,331,015 + QEN71_RS28545 0.68 +0.2
6,331,015 + QEN71_RS28545 0.68 -0.7
6,331,015 + QEN71_RS28545 0.68 -0.2
6,331,015 + QEN71_RS28545 0.68 +1.6
6,331,015 + QEN71_RS28545 0.68 +0.6
6,331,015 + QEN71_RS28545 0.68 +1.3
6,331,015 + QEN71_RS28545 0.68 -0.0
6,331,016 - QEN71_RS28545 0.68 -0.4
6,331,016 - QEN71_RS28545 0.68 -0.6
6,331,094 + QEN71_RS28545 0.75 -0.7
6,331,094 + QEN71_RS28545 0.75 -0.6
6,331,094 + QEN71_RS28545 0.75 -0.0
6,331,095 - QEN71_RS28545 0.75 -2.3
6,331,095 - QEN71_RS28545 0.75 -0.4
6,331,095 - QEN71_RS28545 0.75 -0.9
6,331,283 + +2.3
6,331,283 + +0.6
6,331,284 - +0.4
6,331,284 - -0.6
6,331,351 + -1.1
6,331,351 + -3.1
6,331,352 - -0.8
6,331,457 + -0.0
6,331,458 - -1.1
6,331,580 + -0.7
6,331,580 + -0.2
6,331,581 - +0.1
6,331,597 - +1.3
6,331,604 + +0.2
6,331,604 + -0.1
6,331,604 + +0.1
6,331,604 + +0.6
6,331,604 + -1.4
6,331,604 + +1.3
6,331,604 + -1.1
6,331,604 + +3.4
6,331,604 + -1.2
6,331,604 + -0.3
6,331,605 - +0.4
6,331,605 - +1.7
6,331,605 - +0.3
6,331,605 - -0.3
6,331,605 - +0.4
6,331,605 - -0.7
6,331,605 - +1.3
6,331,605 - -1.1
6,331,605 - -0.1
6,331,647 + +0.6
6,331,648 - +0.1
6,331,692 + +0.2
6,331,692 + -0.3
6,331,693 - -3.8
6,331,693 - +0.3
6,331,693 - +0.2
6,331,693 - -0.4
6,331,693 - +0.2
6,331,780 + -0.4
6,331,780 + +0.2
6,331,898 + +0.8
6,331,898 + -0.5
6,331,994 + QEN71_RS28550 0.16 +1.7
6,331,995 - QEN71_RS28550 0.16 -0.5
6,331,995 - QEN71_RS28550 0.16 +0.3
6,331,995 - QEN71_RS28550 0.16 -1.1
6,331,995 - QEN71_RS28550 0.16 +1.6
6,332,105 + QEN71_RS28550 0.23 -0.7
6,332,105 + QEN71_RS28550 0.23 +0.1
6,332,120 + QEN71_RS28550 0.24 +3.0
6,332,120 + QEN71_RS28550 0.24 +0.1
6,332,120 + QEN71_RS28550 0.24 +0.4
6,332,120 + QEN71_RS28550 0.24 -1.2
6,332,120 + QEN71_RS28550 0.24 -2.6
6,332,121 - QEN71_RS28550 0.24 +0.2
6,332,121 - QEN71_RS28550 0.24 +0.5
6,332,121 - QEN71_RS28550 0.24 -1.0
6,332,121 - QEN71_RS28550 0.24 +0.1
6,332,121 - QEN71_RS28550 0.24 +0.7
6,332,121 - QEN71_RS28550 0.24 -0.4
6,332,121 - QEN71_RS28550 0.24 +0.8
6,332,121 - QEN71_RS28550 0.24 -0.5
6,332,121 - QEN71_RS28550 0.24 +0.4
6,332,121 - QEN71_RS28550 0.24 -1.2
6,332,201 + QEN71_RS28550 0.29 +0.8
6,332,201 + QEN71_RS28550 0.29 +0.1
6,332,202 - QEN71_RS28550 0.29 +0.4
6,332,202 - QEN71_RS28550 0.29 -2.1
6,332,206 + QEN71_RS28550 0.29 -1.1
6,332,206 + QEN71_RS28550 0.29 -1.2
6,332,207 - QEN71_RS28550 0.29 +1.1
6,332,207 - QEN71_RS28550 0.29 -0.8
6,332,207 - QEN71_RS28550 0.29 +0.3
6,332,207 - QEN71_RS28550 0.29 +0.9
6,332,363 + QEN71_RS28550 0.39 +0.6
6,332,363 + QEN71_RS28550 0.39 -0.5
6,332,363 + QEN71_RS28550 0.39 -0.0
6,332,364 - QEN71_RS28550 0.39 +0.1
6,332,456 + QEN71_RS28550 0.45 +0.9
6,332,457 - QEN71_RS28550 0.45 +1.1
6,332,457 - QEN71_RS28550 0.45 -0.6
6,332,457 - QEN71_RS28550 0.45 -1.3
6,332,457 - QEN71_RS28550 0.45 +0.2
6,332,457 - QEN71_RS28550 0.45 -2.1
6,332,482 + QEN71_RS28550 0.46 -0.1
6,332,482 + QEN71_RS28550 0.46 -0.9
6,332,482 + QEN71_RS28550 0.46 -0.1
6,332,534 + QEN71_RS28550 0.49 +0.2
6,332,534 + QEN71_RS28550 0.49 +2.3
6,332,534 + QEN71_RS28550 0.49 +0.3
6,332,534 + QEN71_RS28550 0.49 -0.9
6,332,534 + QEN71_RS28550 0.49 +0.1
6,332,534 + QEN71_RS28550 0.49 -0.1
6,332,534 + QEN71_RS28550 0.49 -0.9
6,332,534 + QEN71_RS28550 0.49 +0.6
6,332,534 + QEN71_RS28550 0.49 +0.3
6,332,534 + QEN71_RS28550 0.49 -0.5
6,332,534 + QEN71_RS28550 0.49 -0.2
6,332,534 + QEN71_RS28550 0.49 +0.1
6,332,535 - QEN71_RS28550 0.49 -0.3
6,332,535 - QEN71_RS28550 0.49 -0.4
6,332,535 - QEN71_RS28550 0.49 +0.1
6,332,535 - QEN71_RS28550 0.49 +0.6
6,332,535 - QEN71_RS28550 0.49 -1.3
6,332,535 - QEN71_RS28550 0.49 -0.1
6,332,580 - QEN71_RS28550 0.52 -1.3
6,332,924 + QEN71_RS28550 0.74 -0.6
6,332,924 + QEN71_RS28550 0.74 +0.2
6,332,924 + QEN71_RS28550 0.74 +0.4
6,332,924 + QEN71_RS28550 0.74 +1.4
6,332,924 + QEN71_RS28550 0.74 -0.4
6,332,924 + QEN71_RS28550 0.74 -0.8
6,332,924 + QEN71_RS28550 0.74 -0.3
6,332,924 + QEN71_RS28550 0.74 -1.3
6,332,924 + QEN71_RS28550 0.74 -0.7
6,332,925 - QEN71_RS28550 0.74 -0.3
6,332,925 - QEN71_RS28550 0.74 +0.8
6,332,925 - QEN71_RS28550 0.74 -0.3
6,332,925 - QEN71_RS28550 0.74 +0.6
6,333,178 + QEN71_RS28550 0.89 +0.1
6,333,178 + QEN71_RS28550 0.89 -1.8
6,333,179 - QEN71_RS28550 0.89 +0.4
6,333,179 - QEN71_RS28550 0.89 -0.1
6,333,179 - QEN71_RS28550 0.89 -0.6
6,333,179 - QEN71_RS28550 0.89 +0.3
6,333,179 - QEN71_RS28550 0.89 +0.5
6,333,179 - QEN71_RS28550 0.89 +1.5
6,333,218 + -0.5
6,333,218 + -0.1
6,333,218 + -0.8
6,333,218 + +2.7
6,333,219 - +0.1
6,333,347 + +0.0
6,333,347 + +0.5
6,333,347 + -0.3
6,333,347 + -0.7
6,333,347 + -0.9
6,333,347 + -0.4
6,333,347 + -0.2
6,333,348 - -1.1
6,333,348 - +0.4
6,333,348 - -1.2
6,333,348 - +0.3
6,333,348 - +0.3
6,333,419 + -0.0
6,333,419 + -0.3
6,333,419 + +0.2
6,333,419 + +1.4
6,333,419 + -0.1
6,333,419 + -0.1
6,333,419 + -0.7
6,333,420 - +0.0
6,333,420 - -0.2
6,333,420 - +0.3
6,333,420 - -0.1
6,333,420 - -0.0
6,333,420 - +0.0
6,333,420 - -0.7
6,333,420 - +0.4
6,333,420 - -1.6
6,333,451 + -0.3
6,333,451 + -0.1
6,333,451 + -0.1
6,333,451 + +0.9
6,333,451 + +1.2
6,333,451 + -1.1
6,333,451 + -0.0
6,333,451 + +1.2
6,333,452 - -0.8
6,333,452 - +0.0
6,333,452 - +0.5
6,333,452 - -0.6
6,333,452 - +0.0
6,333,544 - -0.3
6,333,623 - +0.2
6,333,623 - +0.7
6,333,623 - +0.6
6,333,623 - +0.1
6,333,718 + -0.8
6,333,718 + -0.1
6,333,718 + -0.3
6,333,718 + -0.0
6,333,719 - -0.6

Or see this region's nucleotide sequence