Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS23855

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS23850 and QEN71_RS23855 overlap by 4 nucleotidesQEN71_RS23855 and QEN71_RS23860 are separated by 63 nucleotidesQEN71_RS23860 and QEN71_RS23865 are separated by 69 nucleotides QEN71_RS23850: QEN71_RS23850 - 4Fe-4S binding protein, at 5,310,239 to 5,311,648 _RS23850 QEN71_RS23855: QEN71_RS23855 - FTR1 family protein, at 5,311,645 to 5,312,490 _RS23855 QEN71_RS23860: QEN71_RS23860 - cupredoxin domain-containing protein, at 5,312,554 to 5,312,889 _RS23860 QEN71_RS23865: QEN71_RS23865 - iron transporter, at 5,312,959 to 5,313,507 _RS23865 Position (kb) 5311 5312 5313Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5310.684 kb on + strand, within QEN71_RS23850at 5310.685 kb on - strand, within QEN71_RS23850at 5310.835 kb on - strand, within QEN71_RS23850at 5310.955 kb on + strand, within QEN71_RS23850at 5310.955 kb on + strand, within QEN71_RS23850at 5310.955 kb on + strand, within QEN71_RS23850at 5310.955 kb on + strand, within QEN71_RS23850at 5310.955 kb on + strand, within QEN71_RS23850at 5310.956 kb on - strand, within QEN71_RS23850at 5310.956 kb on - strand, within QEN71_RS23850at 5310.956 kb on - strand, within QEN71_RS23850at 5310.956 kb on - strand, within QEN71_RS23850at 5310.956 kb on - strand, within QEN71_RS23850at 5310.957 kb on - strand, within QEN71_RS23850at 5311.047 kb on + strand, within QEN71_RS23850at 5311.047 kb on + strand, within QEN71_RS23850at 5311.047 kb on + strand, within QEN71_RS23850at 5311.048 kb on - strand, within QEN71_RS23850at 5311.080 kb on + strand, within QEN71_RS23850at 5311.080 kb on + strand, within QEN71_RS23850at 5311.080 kb on + strand, within QEN71_RS23850at 5311.081 kb on - strand, within QEN71_RS23850at 5311.116 kb on - strand, within QEN71_RS23850at 5311.137 kb on + strand, within QEN71_RS23850at 5311.137 kb on + strand, within QEN71_RS23850at 5311.138 kb on - strand, within QEN71_RS23850at 5311.138 kb on - strand, within QEN71_RS23850at 5311.141 kb on + strand, within QEN71_RS23850at 5311.141 kb on + strand, within QEN71_RS23850at 5311.142 kb on - strand, within QEN71_RS23850at 5311.142 kb on - strand, within QEN71_RS23850at 5311.142 kb on - strand, within QEN71_RS23850at 5311.167 kb on + strand, within QEN71_RS23850at 5311.167 kb on + strand, within QEN71_RS23850at 5311.168 kb on - strand, within QEN71_RS23850at 5311.169 kb on + strand, within QEN71_RS23850at 5311.170 kb on - strand, within QEN71_RS23850at 5311.170 kb on - strand, within QEN71_RS23850at 5311.170 kb on - strand, within QEN71_RS23850at 5311.170 kb on - strand, within QEN71_RS23850at 5311.170 kb on - strand, within QEN71_RS23850at 5311.170 kb on - strand, within QEN71_RS23850at 5311.170 kb on - strand, within QEN71_RS23850at 5311.170 kb on - strand, within QEN71_RS23850at 5311.214 kb on + strand, within QEN71_RS23850at 5311.214 kb on + strand, within QEN71_RS23850at 5311.214 kb on + strand, within QEN71_RS23850at 5311.214 kb on + strand, within QEN71_RS23850at 5311.214 kb on + strand, within QEN71_RS23850at 5311.215 kb on - strand, within QEN71_RS23850at 5311.215 kb on - strand, within QEN71_RS23850at 5311.215 kb on - strand, within QEN71_RS23850at 5311.215 kb on - strand, within QEN71_RS23850at 5311.215 kb on - strand, within QEN71_RS23850at 5311.215 kb on - strand, within QEN71_RS23850at 5311.217 kb on + strand, within QEN71_RS23850at 5311.217 kb on + strand, within QEN71_RS23850at 5311.217 kb on + strand, within QEN71_RS23850at 5311.218 kb on - strand, within QEN71_RS23850at 5311.218 kb on - strand, within QEN71_RS23850at 5311.218 kb on - strand, within QEN71_RS23850at 5311.239 kb on + strand, within QEN71_RS23850at 5311.240 kb on - strand, within QEN71_RS23850at 5311.260 kb on + strand, within QEN71_RS23850at 5311.261 kb on - strand, within QEN71_RS23850at 5311.261 kb on - strand, within QEN71_RS23850at 5311.338 kb on + strand, within QEN71_RS23850at 5311.338 kb on + strand, within QEN71_RS23850at 5311.338 kb on + strand, within QEN71_RS23850at 5311.338 kb on + strand, within QEN71_RS23850at 5311.339 kb on - strand, within QEN71_RS23850at 5311.339 kb on - strand, within QEN71_RS23850at 5311.391 kb on + strand, within QEN71_RS23850at 5311.391 kb on + strand, within QEN71_RS23850at 5311.392 kb on - strand, within QEN71_RS23850at 5311.539 kb on + strandat 5311.539 kb on + strandat 5311.540 kb on - strandat 5311.721 kb on + strandat 5311.722 kb on - strandat 5311.730 kb on + strand, within QEN71_RS23855at 5311.730 kb on + strand, within QEN71_RS23855at 5311.730 kb on + strand, within QEN71_RS23855at 5311.730 kb on + strand, within QEN71_RS23855at 5311.731 kb on - strand, within QEN71_RS23855at 5311.731 kb on - strand, within QEN71_RS23855at 5311.731 kb on - strand, within QEN71_RS23855at 5311.731 kb on - strand, within QEN71_RS23855at 5311.731 kb on - strand, within QEN71_RS23855at 5311.731 kb on - strand, within QEN71_RS23855at 5311.828 kb on - strand, within QEN71_RS23855at 5311.828 kb on - strand, within QEN71_RS23855at 5311.828 kb on - strand, within QEN71_RS23855at 5311.828 kb on - strand, within QEN71_RS23855at 5311.985 kb on + strand, within QEN71_RS23855at 5311.985 kb on + strand, within QEN71_RS23855at 5311.985 kb on + strand, within QEN71_RS23855at 5311.985 kb on + strand, within QEN71_RS23855at 5311.985 kb on + strand, within QEN71_RS23855at 5311.985 kb on + strand, within QEN71_RS23855at 5311.986 kb on - strand, within QEN71_RS23855at 5311.986 kb on - strand, within QEN71_RS23855at 5311.986 kb on - strand, within QEN71_RS23855at 5312.076 kb on - strand, within QEN71_RS23855at 5312.277 kb on - strand, within QEN71_RS23855at 5312.277 kb on - strand, within QEN71_RS23855at 5312.349 kb on + strand, within QEN71_RS23855at 5312.375 kb on + strand, within QEN71_RS23855at 5312.376 kb on - strand, within QEN71_RS23855at 5312.376 kb on - strand, within QEN71_RS23855at 5312.423 kb on + strandat 5312.468 kb on - strandat 5312.479 kb on + strandat 5312.479 kb on + strandat 5312.480 kb on - strandat 5312.504 kb on + strandat 5312.504 kb on + strandat 5312.504 kb on + strandat 5312.504 kb on + strandat 5312.504 kb on + strandat 5312.505 kb on - strandat 5312.505 kb on - strandat 5312.532 kb on + strandat 5312.533 kb on - strandat 5312.609 kb on + strand, within QEN71_RS23860at 5312.609 kb on + strand, within QEN71_RS23860at 5312.610 kb on - strand, within QEN71_RS23860at 5312.610 kb on - strand, within QEN71_RS23860at 5312.610 kb on - strand, within QEN71_RS23860at 5312.718 kb on + strand, within QEN71_RS23860at 5312.718 kb on + strand, within QEN71_RS23860at 5312.718 kb on + strand, within QEN71_RS23860at 5312.719 kb on - strand, within QEN71_RS23860at 5312.763 kb on + strand, within QEN71_RS23860at 5312.764 kb on - strand, within QEN71_RS23860at 5312.764 kb on - strand, within QEN71_RS23860at 5312.920 kb on - strandat 5312.920 kb on - strandat 5312.920 kb on - strandat 5312.920 kb on - strandat 5312.920 kb on - strandat 5312.963 kb on + strandat 5313.116 kb on + strand, within QEN71_RS23865at 5313.116 kb on + strand, within QEN71_RS23865at 5313.116 kb on + strand, within QEN71_RS23865at 5313.116 kb on + strand, within QEN71_RS23865at 5313.116 kb on + strand, within QEN71_RS23865at 5313.116 kb on + strand, within QEN71_RS23865at 5313.116 kb on + strand, within QEN71_RS23865at 5313.117 kb on - strand, within QEN71_RS23865at 5313.117 kb on - strand, within QEN71_RS23865at 5313.117 kb on - strand, within QEN71_RS23865at 5313.117 kb on - strand, within QEN71_RS23865at 5313.203 kb on + strand, within QEN71_RS23865at 5313.203 kb on + strand, within QEN71_RS23865at 5313.203 kb on + strand, within QEN71_RS23865at 5313.203 kb on + strand, within QEN71_RS23865at 5313.204 kb on - strand, within QEN71_RS23865at 5313.204 kb on - strand, within QEN71_RS23865at 5313.245 kb on + strand, within QEN71_RS23865at 5313.245 kb on + strand, within QEN71_RS23865at 5313.246 kb on - strand, within QEN71_RS23865at 5313.246 kb on - strand, within QEN71_RS23865at 5313.246 kb on - strand, within QEN71_RS23865at 5313.246 kb on - strand, within QEN71_RS23865at 5313.336 kb on + strand, within QEN71_RS23865at 5313.336 kb on + strand, within QEN71_RS23865at 5313.337 kb on - strand, within QEN71_RS23865at 5313.337 kb on - strand, within QEN71_RS23865at 5313.377 kb on + strand, within QEN71_RS23865at 5313.377 kb on + strand, within QEN71_RS23865at 5313.378 kb on - strand, within QEN71_RS23865at 5313.378 kb on - strand, within QEN71_RS23865at 5313.378 kb on - strand, within QEN71_RS23865at 5313.378 kb on - strand, within QEN71_RS23865at 5313.378 kb on - strand, within QEN71_RS23865at 5313.476 kb on - strandat 5313.476 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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5,310,684 + QEN71_RS23850 0.32 -0.1
5,310,685 - QEN71_RS23850 0.32 -0.0
5,310,835 - QEN71_RS23850 0.42 +1.6
5,310,955 + QEN71_RS23850 0.51 -0.9
5,310,955 + QEN71_RS23850 0.51 -1.3
5,310,955 + QEN71_RS23850 0.51 -1.6
5,310,955 + QEN71_RS23850 0.51 +0.0
5,310,955 + QEN71_RS23850 0.51 +1.2
5,310,956 - QEN71_RS23850 0.51 +0.5
5,310,956 - QEN71_RS23850 0.51 -0.9
5,310,956 - QEN71_RS23850 0.51 +0.4
5,310,956 - QEN71_RS23850 0.51 -0.1
5,310,956 - QEN71_RS23850 0.51 -0.3
5,310,957 - QEN71_RS23850 0.51 -1.4
5,311,047 + QEN71_RS23850 0.57 -0.7
5,311,047 + QEN71_RS23850 0.57 +0.2
5,311,047 + QEN71_RS23850 0.57 -0.2
5,311,048 - QEN71_RS23850 0.57 +0.2
5,311,080 + QEN71_RS23850 0.60 -0.1
5,311,080 + QEN71_RS23850 0.60 -0.4
5,311,080 + QEN71_RS23850 0.60 -1.3
5,311,081 - QEN71_RS23850 0.60 -1.1
5,311,116 - QEN71_RS23850 0.62 +0.9
5,311,137 + QEN71_RS23850 0.64 -0.1
5,311,137 + QEN71_RS23850 0.64 -0.9
5,311,138 - QEN71_RS23850 0.64 -0.0
5,311,138 - QEN71_RS23850 0.64 -0.0
5,311,141 + QEN71_RS23850 0.64 -1.2
5,311,141 + QEN71_RS23850 0.64 -0.4
5,311,142 - QEN71_RS23850 0.64 -0.1
5,311,142 - QEN71_RS23850 0.64 -0.2
5,311,142 - QEN71_RS23850 0.64 -0.2
5,311,167 + QEN71_RS23850 0.66 -0.1
5,311,167 + QEN71_RS23850 0.66 -0.8
5,311,168 - QEN71_RS23850 0.66 +0.9
5,311,169 + QEN71_RS23850 0.66 +1.1
5,311,170 - QEN71_RS23850 0.66 -1.1
5,311,170 - QEN71_RS23850 0.66 -0.2
5,311,170 - QEN71_RS23850 0.66 -1.1
5,311,170 - QEN71_RS23850 0.66 +0.4
5,311,170 - QEN71_RS23850 0.66 -0.1
5,311,170 - QEN71_RS23850 0.66 +1.9
5,311,170 - QEN71_RS23850 0.66 +0.3
5,311,170 - QEN71_RS23850 0.66 -1.1
5,311,214 + QEN71_RS23850 0.69 -0.9
5,311,214 + QEN71_RS23850 0.69 -0.3
5,311,214 + QEN71_RS23850 0.69 +0.8
5,311,214 + QEN71_RS23850 0.69 -0.8
5,311,214 + QEN71_RS23850 0.69 +0.2
5,311,215 - QEN71_RS23850 0.69 -0.9
5,311,215 - QEN71_RS23850 0.69 -0.1
5,311,215 - QEN71_RS23850 0.69 +1.5
5,311,215 - QEN71_RS23850 0.69 -1.4
5,311,215 - QEN71_RS23850 0.69 -0.4
5,311,215 - QEN71_RS23850 0.69 -0.9
5,311,217 + QEN71_RS23850 0.69 +0.6
5,311,217 + QEN71_RS23850 0.69 +1.0
5,311,217 + QEN71_RS23850 0.69 -0.2
5,311,218 - QEN71_RS23850 0.69 -2.0
5,311,218 - QEN71_RS23850 0.69 +1.4
5,311,218 - QEN71_RS23850 0.69 +0.2
5,311,239 + QEN71_RS23850 0.71 +0.9
5,311,240 - QEN71_RS23850 0.71 -2.0
5,311,260 + QEN71_RS23850 0.72 -1.6
5,311,261 - QEN71_RS23850 0.72 -1.2
5,311,261 - QEN71_RS23850 0.72 -0.9
5,311,338 + QEN71_RS23850 0.78 +0.6
5,311,338 + QEN71_RS23850 0.78 +0.9
5,311,338 + QEN71_RS23850 0.78 +0.1
5,311,338 + QEN71_RS23850 0.78 -0.1
5,311,339 - QEN71_RS23850 0.78 +0.8
5,311,339 - QEN71_RS23850 0.78 -0.7
5,311,391 + QEN71_RS23850 0.82 -1.3
5,311,391 + QEN71_RS23850 0.82 -0.7
5,311,392 - QEN71_RS23850 0.82 -1.1
5,311,539 + -0.4
5,311,539 + -0.1
5,311,540 - -1.4
5,311,721 + -0.1
5,311,722 - -2.2
5,311,730 + QEN71_RS23855 0.10 -0.9
5,311,730 + QEN71_RS23855 0.10 +0.7
5,311,730 + QEN71_RS23855 0.10 +1.6
5,311,730 + QEN71_RS23855 0.10 -0.2
5,311,731 - QEN71_RS23855 0.10 -1.9
5,311,731 - QEN71_RS23855 0.10 -0.1
5,311,731 - QEN71_RS23855 0.10 -0.4
5,311,731 - QEN71_RS23855 0.10 -1.6
5,311,731 - QEN71_RS23855 0.10 -0.1
5,311,731 - QEN71_RS23855 0.10 -0.8
5,311,828 - QEN71_RS23855 0.22 -0.8
5,311,828 - QEN71_RS23855 0.22 -0.7
5,311,828 - QEN71_RS23855 0.22 -1.3
5,311,828 - QEN71_RS23855 0.22 -0.1
5,311,985 + QEN71_RS23855 0.40 -0.3
5,311,985 + QEN71_RS23855 0.40 -0.4
5,311,985 + QEN71_RS23855 0.40 -0.2
5,311,985 + QEN71_RS23855 0.40 -2.3
5,311,985 + QEN71_RS23855 0.40 -2.4
5,311,985 + QEN71_RS23855 0.40 -1.1
5,311,986 - QEN71_RS23855 0.40 -0.4
5,311,986 - QEN71_RS23855 0.40 -1.2
5,311,986 - QEN71_RS23855 0.40 -0.3
5,312,076 - QEN71_RS23855 0.51 +0.1
5,312,277 - QEN71_RS23855 0.75 +0.7
5,312,277 - QEN71_RS23855 0.75 -1.1
5,312,349 + QEN71_RS23855 0.83 +0.4
5,312,375 + QEN71_RS23855 0.86 -0.0
5,312,376 - QEN71_RS23855 0.86 -0.3
5,312,376 - QEN71_RS23855 0.86 -2.9
5,312,423 + -0.4
5,312,468 - -1.0
5,312,479 + +0.2
5,312,479 + -0.2
5,312,480 - -0.0
5,312,504 + -0.2
5,312,504 + +0.1
5,312,504 + -0.7
5,312,504 + +2.1
5,312,504 + +0.6
5,312,505 - +0.6
5,312,505 - +1.1
5,312,532 + +0.3
5,312,533 - -0.4
5,312,609 + QEN71_RS23860 0.16 -1.3
5,312,609 + QEN71_RS23860 0.16 -2.2
5,312,610 - QEN71_RS23860 0.17 -0.1
5,312,610 - QEN71_RS23860 0.17 -0.4
5,312,610 - QEN71_RS23860 0.17 -0.0
5,312,718 + QEN71_RS23860 0.49 +1.3
5,312,718 + QEN71_RS23860 0.49 -0.1
5,312,718 + QEN71_RS23860 0.49 -0.9
5,312,719 - QEN71_RS23860 0.49 -0.2
5,312,763 + QEN71_RS23860 0.62 +0.1
5,312,764 - QEN71_RS23860 0.62 +1.2
5,312,764 - QEN71_RS23860 0.62 -0.6
5,312,920 - -0.4
5,312,920 - -0.2
5,312,920 - +1.5
5,312,920 - -1.1
5,312,920 - -0.2
5,312,963 + -0.3
5,313,116 + QEN71_RS23865 0.29 -1.1
5,313,116 + QEN71_RS23865 0.29 +0.9
5,313,116 + QEN71_RS23865 0.29 +0.3
5,313,116 + QEN71_RS23865 0.29 -3.6
5,313,116 + QEN71_RS23865 0.29 -1.7
5,313,116 + QEN71_RS23865 0.29 +0.4
5,313,116 + QEN71_RS23865 0.29 -0.3
5,313,117 - QEN71_RS23865 0.29 -1.8
5,313,117 - QEN71_RS23865 0.29 -0.8
5,313,117 - QEN71_RS23865 0.29 +1.2
5,313,117 - QEN71_RS23865 0.29 -0.4
5,313,203 + QEN71_RS23865 0.44 -0.6
5,313,203 + QEN71_RS23865 0.44 -0.3
5,313,203 + QEN71_RS23865 0.44 +0.4
5,313,203 + QEN71_RS23865 0.44 -0.4
5,313,204 - QEN71_RS23865 0.45 -0.5
5,313,204 - QEN71_RS23865 0.45 +0.9
5,313,245 + QEN71_RS23865 0.52 +1.1
5,313,245 + QEN71_RS23865 0.52 +1.2
5,313,246 - QEN71_RS23865 0.52 +1.6
5,313,246 - QEN71_RS23865 0.52 -2.2
5,313,246 - QEN71_RS23865 0.52 -1.3
5,313,246 - QEN71_RS23865 0.52 -0.1
5,313,336 + QEN71_RS23865 0.69 +0.0
5,313,336 + QEN71_RS23865 0.69 +0.3
5,313,337 - QEN71_RS23865 0.69 +0.2
5,313,337 - QEN71_RS23865 0.69 -0.0
5,313,377 + QEN71_RS23865 0.76 -1.8
5,313,377 + QEN71_RS23865 0.76 -0.7
5,313,378 - QEN71_RS23865 0.76 -1.4
5,313,378 - QEN71_RS23865 0.76 -0.5
5,313,378 - QEN71_RS23865 0.76 +1.3
5,313,378 - QEN71_RS23865 0.76 -2.0
5,313,378 - QEN71_RS23865 0.76 -0.5
5,313,476 - -1.7
5,313,476 - -0.7

Or see this region's nucleotide sequence