Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS09660

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS09650 and QEN71_RS09655 overlap by 22 nucleotidesQEN71_RS09655 and QEN71_RS09660 are separated by 462 nucleotidesQEN71_RS09660 and QEN71_RS09665 are separated by 400 nucleotides QEN71_RS09650: QEN71_RS09650 - MFS transporter, at 2,154,835 to 2,156,076 _RS09650 QEN71_RS09655: QEN71_RS09655 - hypothetical protein, at 2,156,055 to 2,156,294 _RS09655 QEN71_RS09660: QEN71_RS09660 - NADP-dependent isocitrate dehydrogenase, at 2,156,757 to 2,159,000 _RS09660 QEN71_RS09665: QEN71_RS09665 - MBL fold metallo-hydrolase, at 2,159,401 to 2,160,537 _RS09665 Position (kb) 2156 2157 2158 2159 2160Strain fitness (log2 ratio) -2 -1 0 1 2at 2155.922 kb on + strand, within QEN71_RS09650at 2155.922 kb on + strand, within QEN71_RS09650at 2155.923 kb on - strand, within QEN71_RS09650at 2155.923 kb on - strand, within QEN71_RS09650at 2155.923 kb on - strand, within QEN71_RS09650at 2155.923 kb on - strand, within QEN71_RS09650at 2156.486 kb on - strandat 2156.486 kb on - strandat 2156.486 kb on - strandat 2156.520 kb on + strandat 2156.520 kb on + strandat 2156.539 kb on - strandat 2156.712 kb on - strandat 2156.712 kb on - strandat 2156.712 kb on - strandat 2156.712 kb on - strandat 2156.712 kb on - strandat 2156.714 kb on + strandat 2156.715 kb on - strandat 2156.715 kb on - strandat 2156.734 kb on + strandat 2156.734 kb on + strandat 2156.734 kb on + strandat 2156.734 kb on + strandat 2156.734 kb on + strandat 2156.734 kb on + strandat 2156.735 kb on - strandat 2156.735 kb on - strandat 2156.743 kb on - strandat 2156.743 kb on - strandat 2156.743 kb on - strandat 2156.758 kb on + strandat 2156.758 kb on + strandat 2156.759 kb on - strandat 2156.759 kb on - strandat 2159.081 kb on - strandat 2159.081 kb on - strandat 2159.329 kb on + strandat 2159.330 kb on - strandat 2159.349 kb on + strandat 2159.349 kb on + strandat 2159.349 kb on + strandat 2159.349 kb on + strandat 2159.349 kb on + strandat 2159.349 kb on + strandat 2159.349 kb on + strandat 2159.350 kb on - strandat 2159.350 kb on - strandat 2159.350 kb on - strandat 2159.395 kb on + strandat 2159.395 kb on + strandat 2159.395 kb on + strandat 2159.395 kb on + strandat 2159.395 kb on + strandat 2159.397 kb on + strandat 2159.397 kb on + strandat 2159.397 kb on + strandat 2159.397 kb on + strandat 2159.397 kb on + strandat 2159.397 kb on + strandat 2159.397 kb on + strandat 2159.397 kb on + strandat 2159.397 kb on + strandat 2159.397 kb on + strandat 2159.397 kb on + strandat 2159.397 kb on + strandat 2159.397 kb on + strandat 2159.398 kb on - strandat 2159.398 kb on - strandat 2159.398 kb on - strandat 2159.398 kb on - strandat 2159.398 kb on - strandat 2159.398 kb on - strandat 2159.398 kb on - strandat 2159.398 kb on - strandat 2159.398 kb on - strandat 2159.398 kb on - strandat 2159.398 kb on - strandat 2159.398 kb on - strandat 2159.398 kb on - strandat 2159.398 kb on - strandat 2159.398 kb on - strandat 2159.468 kb on - strandat 2159.554 kb on + strand, within QEN71_RS09665at 2159.554 kb on + strand, within QEN71_RS09665at 2159.650 kb on + strand, within QEN71_RS09665at 2159.865 kb on + strand, within QEN71_RS09665at 2159.866 kb on - strand, within QEN71_RS09665at 2159.866 kb on - strand, within QEN71_RS09665at 2159.896 kb on + strand, within QEN71_RS09665at 2159.896 kb on + strand, within QEN71_RS09665at 2159.896 kb on + strand, within QEN71_RS09665at 2159.896 kb on + strand, within QEN71_RS09665at 2159.896 kb on + strand, within QEN71_RS09665at 2159.896 kb on + strand, within QEN71_RS09665at 2159.897 kb on - strand, within QEN71_RS09665at 2159.897 kb on - strand, within QEN71_RS09665at 2159.897 kb on - strand, within QEN71_RS09665

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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2,155,922 + QEN71_RS09650 0.88 +1.2
2,155,922 + QEN71_RS09650 0.88 -1.7
2,155,923 - QEN71_RS09650 0.88 -1.1
2,155,923 - QEN71_RS09650 0.88 -0.0
2,155,923 - QEN71_RS09650 0.88 +0.8
2,155,923 - QEN71_RS09650 0.88 +0.0
2,156,486 - -0.8
2,156,486 - -0.2
2,156,486 - -0.4
2,156,520 + -2.0
2,156,520 + +0.4
2,156,539 - -0.1
2,156,712 - -1.4
2,156,712 - -0.6
2,156,712 - +0.5
2,156,712 - -0.1
2,156,712 - -0.4
2,156,714 + -0.4
2,156,715 - +0.6
2,156,715 - -0.2
2,156,734 + -0.8
2,156,734 + -0.3
2,156,734 + +1.2
2,156,734 + +1.7
2,156,734 + +0.8
2,156,734 + -0.0
2,156,735 - -0.2
2,156,735 - -0.9
2,156,743 - +0.1
2,156,743 - -0.2
2,156,743 - -0.7
2,156,758 + -0.8
2,156,758 + -1.0
2,156,759 - -0.0
2,156,759 - -0.1
2,159,081 - -0.2
2,159,081 - +0.5
2,159,329 + +1.0
2,159,330 - -0.1
2,159,349 + +0.6
2,159,349 + -0.4
2,159,349 + -0.9
2,159,349 + -0.5
2,159,349 + +0.8
2,159,349 + +0.0
2,159,349 + +0.1
2,159,350 - +0.2
2,159,350 - +1.4
2,159,350 - -1.6
2,159,395 + -0.2
2,159,395 + -2.1
2,159,395 + -1.2
2,159,395 + -0.5
2,159,395 + +0.3
2,159,397 + +0.2
2,159,397 + -0.2
2,159,397 + +1.4
2,159,397 + +0.5
2,159,397 + -0.5
2,159,397 + -2.5
2,159,397 + -0.8
2,159,397 + -0.9
2,159,397 + -1.7
2,159,397 + -0.3
2,159,397 + +0.1
2,159,397 + -0.2
2,159,397 + -1.6
2,159,398 - -0.7
2,159,398 - -0.4
2,159,398 - -0.5
2,159,398 - -0.9
2,159,398 - -1.2
2,159,398 - -0.1
2,159,398 - -1.5
2,159,398 - -0.1
2,159,398 - +0.1
2,159,398 - -0.2
2,159,398 - +0.3
2,159,398 - +0.2
2,159,398 - -0.0
2,159,398 - -0.3
2,159,398 - -0.2
2,159,468 - -1.2
2,159,554 + QEN71_RS09665 0.13 -0.4
2,159,554 + QEN71_RS09665 0.13 +0.2
2,159,650 + QEN71_RS09665 0.22 +0.2
2,159,865 + QEN71_RS09665 0.41 -0.9
2,159,866 - QEN71_RS09665 0.41 -0.8
2,159,866 - QEN71_RS09665 0.41 -0.8
2,159,896 + QEN71_RS09665 0.44 -0.9
2,159,896 + QEN71_RS09665 0.44 -0.3
2,159,896 + QEN71_RS09665 0.44 -0.2
2,159,896 + QEN71_RS09665 0.44 +0.3
2,159,896 + QEN71_RS09665 0.44 +1.8
2,159,896 + QEN71_RS09665 0.44 -1.0
2,159,897 - QEN71_RS09665 0.44 -0.8
2,159,897 - QEN71_RS09665 0.44 +2.0
2,159,897 - QEN71_RS09665 0.44 -0.6

Or see this region's nucleotide sequence