Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS06530

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS06520 and QEN71_RS06525 are separated by 131 nucleotidesQEN71_RS06525 and QEN71_RS06530 overlap by 4 nucleotidesQEN71_RS06530 and QEN71_RS06535 are separated by 94 nucleotides QEN71_RS06520: QEN71_RS06520 - SsrA-binding protein SmpB, at 1,449,405 to 1,449,851 _RS06520 QEN71_RS06525: QEN71_RS06525 - type II toxin-antitoxin system RatA family toxin, at 1,449,983 to 1,450,420 _RS06525 QEN71_RS06530: QEN71_RS06530 - RnfH family protein, at 1,450,417 to 1,450,749 _RS06530 QEN71_RS06535: QEN71_RS06535 - DMT family transporter, at 1,450,844 to 1,451,818 _RS06535 Position (kb) 1450 1451Strain fitness (log2 ratio) -2 -1 0 1 2at 1449.953 kb on + strandat 1449.982 kb on + strandat 1450.447 kb on + strandat 1450.792 kb on + strandat 1450.792 kb on + strandat 1450.793 kb on - strandat 1450.793 kb on - strandat 1450.793 kb on - strandat 1450.793 kb on - strandat 1450.943 kb on + strand, within QEN71_RS06535at 1450.943 kb on + strand, within QEN71_RS06535at 1450.943 kb on + strand, within QEN71_RS06535at 1450.943 kb on + strand, within QEN71_RS06535at 1450.944 kb on - strand, within QEN71_RS06535at 1450.944 kb on - strand, within QEN71_RS06535at 1450.944 kb on - strand, within QEN71_RS06535at 1450.986 kb on + strand, within QEN71_RS06535at 1450.986 kb on + strand, within QEN71_RS06535at 1450.986 kb on + strand, within QEN71_RS06535at 1450.986 kb on + strand, within QEN71_RS06535at 1450.986 kb on + strand, within QEN71_RS06535at 1450.986 kb on + strand, within QEN71_RS06535at 1450.986 kb on + strand, within QEN71_RS06535at 1450.986 kb on + strand, within QEN71_RS06535at 1450.986 kb on + strand, within QEN71_RS06535at 1450.987 kb on - strand, within QEN71_RS06535at 1450.987 kb on - strand, within QEN71_RS06535at 1450.987 kb on - strand, within QEN71_RS06535at 1450.987 kb on - strand, within QEN71_RS06535at 1450.987 kb on - strand, within QEN71_RS06535at 1450.987 kb on - strand, within QEN71_RS06535at 1450.998 kb on + strand, within QEN71_RS06535at 1450.998 kb on + strand, within QEN71_RS06535at 1450.998 kb on + strand, within QEN71_RS06535at 1450.999 kb on - strand, within QEN71_RS06535at 1450.999 kb on - strand, within QEN71_RS06535at 1450.999 kb on - strand, within QEN71_RS06535at 1451.149 kb on + strand, within QEN71_RS06535at 1451.286 kb on + strand, within QEN71_RS06535at 1451.287 kb on - strand, within QEN71_RS06535at 1451.287 kb on - strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.581 kb on - strand, within QEN71_RS06535at 1451.581 kb on - strand, within QEN71_RS06535at 1451.581 kb on - strand, within QEN71_RS06535at 1451.581 kb on - strand, within QEN71_RS06535at 1451.581 kb on - strand, within QEN71_RS06535at 1451.581 kb on - strand, within QEN71_RS06535at 1451.581 kb on - strand, within QEN71_RS06535at 1451.581 kb on - strand, within QEN71_RS06535at 1451.583 kb on + strand, within QEN71_RS06535at 1451.583 kb on + strand, within QEN71_RS06535at 1451.583 kb on + strand, within QEN71_RS06535at 1451.583 kb on + strand, within QEN71_RS06535at 1451.583 kb on + strand, within QEN71_RS06535at 1451.583 kb on + strand, within QEN71_RS06535at 1451.583 kb on + strand, within QEN71_RS06535at 1451.583 kb on + strand, within QEN71_RS06535at 1451.584 kb on - strand, within QEN71_RS06535at 1451.584 kb on - strand, within QEN71_RS06535at 1451.584 kb on - strand, within QEN71_RS06535at 1451.584 kb on - strand, within QEN71_RS06535at 1451.584 kb on - strand, within QEN71_RS06535at 1451.584 kb on - strand, within QEN71_RS06535at 1451.584 kb on - strand, within QEN71_RS06535at 1451.697 kb on + strand, within QEN71_RS06535at 1451.697 kb on + strand, within QEN71_RS06535at 1451.697 kb on + strand, within QEN71_RS06535at 1451.697 kb on + strand, within QEN71_RS06535at 1451.697 kb on + strand, within QEN71_RS06535at 1451.697 kb on + strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.706 kb on + strand, within QEN71_RS06535at 1451.706 kb on + strand, within QEN71_RS06535at 1451.706 kb on + strand, within QEN71_RS06535at 1451.706 kb on + strand, within QEN71_RS06535at 1451.707 kb on - strand, within QEN71_RS06535at 1451.707 kb on - strand, within QEN71_RS06535at 1451.707 kb on - strand, within QEN71_RS06535at 1451.707 kb on - strand, within QEN71_RS06535at 1451.707 kb on - strand, within QEN71_RS06535at 1451.707 kb on - strand, within QEN71_RS06535

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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1,449,953 + -0.4
1,449,982 + +0.5
1,450,447 + +0.3
1,450,792 + +0.7
1,450,792 + +0.3
1,450,793 - +0.1
1,450,793 - +0.6
1,450,793 - -0.0
1,450,793 - -1.9
1,450,943 + QEN71_RS06535 0.10 -0.9
1,450,943 + QEN71_RS06535 0.10 -0.1
1,450,943 + QEN71_RS06535 0.10 -0.4
1,450,943 + QEN71_RS06535 0.10 -0.7
1,450,944 - QEN71_RS06535 0.10 +0.1
1,450,944 - QEN71_RS06535 0.10 -2.2
1,450,944 - QEN71_RS06535 0.10 +0.5
1,450,986 + QEN71_RS06535 0.15 +0.6
1,450,986 + QEN71_RS06535 0.15 +0.9
1,450,986 + QEN71_RS06535 0.15 +2.4
1,450,986 + QEN71_RS06535 0.15 -0.3
1,450,986 + QEN71_RS06535 0.15 -0.2
1,450,986 + QEN71_RS06535 0.15 -0.7
1,450,986 + QEN71_RS06535 0.15 -0.4
1,450,986 + QEN71_RS06535 0.15 -1.4
1,450,986 + QEN71_RS06535 0.15 +0.6
1,450,987 - QEN71_RS06535 0.15 -1.1
1,450,987 - QEN71_RS06535 0.15 +0.8
1,450,987 - QEN71_RS06535 0.15 +1.1
1,450,987 - QEN71_RS06535 0.15 -0.7
1,450,987 - QEN71_RS06535 0.15 -0.9
1,450,987 - QEN71_RS06535 0.15 +0.4
1,450,998 + QEN71_RS06535 0.16 -0.6
1,450,998 + QEN71_RS06535 0.16 +0.6
1,450,998 + QEN71_RS06535 0.16 +0.1
1,450,999 - QEN71_RS06535 0.16 -0.0
1,450,999 - QEN71_RS06535 0.16 -2.0
1,450,999 - QEN71_RS06535 0.16 +0.9
1,451,149 + QEN71_RS06535 0.31 -1.1
1,451,286 + QEN71_RS06535 0.45 -2.7
1,451,287 - QEN71_RS06535 0.45 +0.2
1,451,287 - QEN71_RS06535 0.45 +0.7
1,451,580 + QEN71_RS06535 0.75 -1.4
1,451,580 + QEN71_RS06535 0.75 -0.7
1,451,580 + QEN71_RS06535 0.75 +0.8
1,451,580 + QEN71_RS06535 0.75 -0.1
1,451,580 + QEN71_RS06535 0.75 -0.1
1,451,580 + QEN71_RS06535 0.75 +0.5
1,451,580 + QEN71_RS06535 0.75 +0.3
1,451,580 + QEN71_RS06535 0.75 +0.4
1,451,580 + QEN71_RS06535 0.75 -0.3
1,451,580 + QEN71_RS06535 0.75 -1.2
1,451,580 + QEN71_RS06535 0.75 -0.7
1,451,581 - QEN71_RS06535 0.76 -0.4
1,451,581 - QEN71_RS06535 0.76 +0.9
1,451,581 - QEN71_RS06535 0.76 -1.2
1,451,581 - QEN71_RS06535 0.76 -0.1
1,451,581 - QEN71_RS06535 0.76 -0.8
1,451,581 - QEN71_RS06535 0.76 -0.5
1,451,581 - QEN71_RS06535 0.76 +0.6
1,451,581 - QEN71_RS06535 0.76 -0.5
1,451,583 + QEN71_RS06535 0.76 -1.0
1,451,583 + QEN71_RS06535 0.76 -1.2
1,451,583 + QEN71_RS06535 0.76 +0.2
1,451,583 + QEN71_RS06535 0.76 -0.4
1,451,583 + QEN71_RS06535 0.76 -1.1
1,451,583 + QEN71_RS06535 0.76 -1.3
1,451,583 + QEN71_RS06535 0.76 +0.5
1,451,583 + QEN71_RS06535 0.76 -0.1
1,451,584 - QEN71_RS06535 0.76 -0.7
1,451,584 - QEN71_RS06535 0.76 +0.0
1,451,584 - QEN71_RS06535 0.76 -0.4
1,451,584 - QEN71_RS06535 0.76 -0.1
1,451,584 - QEN71_RS06535 0.76 +0.4
1,451,584 - QEN71_RS06535 0.76 -0.3
1,451,584 - QEN71_RS06535 0.76 +0.5
1,451,697 + QEN71_RS06535 0.87 +0.3
1,451,697 + QEN71_RS06535 0.87 -0.6
1,451,697 + QEN71_RS06535 0.87 +0.2
1,451,697 + QEN71_RS06535 0.87 +0.4
1,451,697 + QEN71_RS06535 0.87 +0.3
1,451,697 + QEN71_RS06535 0.87 -0.7
1,451,698 - QEN71_RS06535 0.88 +0.3
1,451,698 - QEN71_RS06535 0.88 -0.2
1,451,698 - QEN71_RS06535 0.88 +0.9
1,451,698 - QEN71_RS06535 0.88 -0.7
1,451,698 - QEN71_RS06535 0.88 +0.6
1,451,698 - QEN71_RS06535 0.88 -0.7
1,451,698 - QEN71_RS06535 0.88 -0.1
1,451,698 - QEN71_RS06535 0.88 +0.7
1,451,698 - QEN71_RS06535 0.88 +0.2
1,451,698 - QEN71_RS06535 0.88 +0.1
1,451,698 - QEN71_RS06535 0.88 +0.1
1,451,698 - QEN71_RS06535 0.88 -0.7
1,451,706 + QEN71_RS06535 0.88 +1.1
1,451,706 + QEN71_RS06535 0.88 -1.1
1,451,706 + QEN71_RS06535 0.88 +0.7
1,451,706 + QEN71_RS06535 0.88 -0.3
1,451,707 - QEN71_RS06535 0.89 +0.7
1,451,707 - QEN71_RS06535 0.89 +1.2
1,451,707 - QEN71_RS06535 0.89 -0.4
1,451,707 - QEN71_RS06535 0.89 +0.1
1,451,707 - QEN71_RS06535 0.89 +0.1
1,451,707 - QEN71_RS06535 0.89 +0.6

Or see this region's nucleotide sequence