Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04222 and MIT1002_04223 are separated by 42 nucleotides MIT1002_04223 and MIT1002_04224 are separated by 26 nucleotides MIT1002_04224 and MIT1002_04225 overlap by 17 nucleotides
MIT1002_04222: MIT1002_04222 - Chemotaxis response regulator protein-glutamate methylesterase of group 3 operon, at 90,832 to 91,878
_04222
MIT1002_04223: MIT1002_04223 - Transcriptional regulatory protein YycF, at 91,921 to 92,292
_04223
MIT1002_04224: MIT1002_04224 - Hpt domain protein, at 92,319 to 92,687
_04224
MIT1002_04225: MIT1002_04225 - KDP operon transcriptional regulatory protein KdpE, at 92,671 to 93,651
_04225
Position (kb) 91
92
93 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 90.934 kb on + strand at 90.952 kb on + strand, within MIT1002_04222 at 91.128 kb on - strand, within MIT1002_04222 at 91.135 kb on + strand, within MIT1002_04222 at 91.143 kb on - strand, within MIT1002_04222 at 91.143 kb on - strand, within MIT1002_04222 at 91.202 kb on + strand, within MIT1002_04222 at 91.209 kb on - strand, within MIT1002_04222 at 91.213 kb on + strand, within MIT1002_04222 at 91.220 kb on - strand, within MIT1002_04222 at 91.228 kb on + strand, within MIT1002_04222 at 91.228 kb on + strand, within MIT1002_04222 at 91.236 kb on - strand, within MIT1002_04222 at 91.236 kb on - strand, within MIT1002_04222 at 91.236 kb on - strand, within MIT1002_04222 at 91.236 kb on - strand, within MIT1002_04222 at 91.341 kb on + strand, within MIT1002_04222 at 91.342 kb on + strand, within MIT1002_04222 at 91.349 kb on - strand, within MIT1002_04222 at 91.349 kb on - strand, within MIT1002_04222 at 91.349 kb on - strand, within MIT1002_04222 at 91.349 kb on - strand, within MIT1002_04222 at 91.350 kb on - strand, within MIT1002_04222 at 91.413 kb on - strand, within MIT1002_04222 at 91.413 kb on - strand, within MIT1002_04222 at 91.413 kb on - strand, within MIT1002_04222 at 91.485 kb on + strand, within MIT1002_04222 at 91.500 kb on + strand, within MIT1002_04222 at 91.553 kb on + strand, within MIT1002_04222 at 91.623 kb on + strand, within MIT1002_04222 at 91.631 kb on - strand, within MIT1002_04222 at 91.631 kb on - strand, within MIT1002_04222 at 91.638 kb on - strand, within MIT1002_04222 at 91.642 kb on + strand, within MIT1002_04222 at 91.664 kb on + strand, within MIT1002_04222 at 91.671 kb on + strand, within MIT1002_04222 at 91.672 kb on - strand, within MIT1002_04222 at 91.694 kb on + strand, within MIT1002_04222 at 91.747 kb on + strand, within MIT1002_04222 at 91.776 kb on + strand at 91.776 kb on + strand at 91.776 kb on + strand at 91.776 kb on + strand at 91.784 kb on - strand at 91.817 kb on - strand at 91.922 kb on - strand at 92.057 kb on + strand, within MIT1002_04223 at 92.131 kb on + strand, within MIT1002_04223 at 92.193 kb on + strand, within MIT1002_04223 at 92.201 kb on - strand, within MIT1002_04223 at 92.309 kb on + strand at 92.311 kb on + strand at 92.319 kb on + strand at 92.321 kb on + strand at 92.377 kb on - strand, within MIT1002_04224 at 92.382 kb on + strand, within MIT1002_04224 at 92.402 kb on - strand, within MIT1002_04224 at 92.406 kb on + strand, within MIT1002_04224 at 92.416 kb on + strand, within MIT1002_04224 at 92.419 kb on + strand, within MIT1002_04224 at 92.424 kb on + strand, within MIT1002_04224 at 92.424 kb on - strand, within MIT1002_04224 at 92.435 kb on + strand, within MIT1002_04224 at 92.496 kb on + strand, within MIT1002_04224 at 92.504 kb on - strand, within MIT1002_04224 at 92.506 kb on - strand, within MIT1002_04224 at 92.506 kb on - strand, within MIT1002_04224 at 92.508 kb on + strand, within MIT1002_04224 at 92.516 kb on - strand, within MIT1002_04224 at 92.516 kb on - strand, within MIT1002_04224 at 92.538 kb on + strand, within MIT1002_04224 at 92.546 kb on - strand, within MIT1002_04224 at 92.595 kb on + strand, within MIT1002_04224 at 92.596 kb on - strand, within MIT1002_04224 at 92.608 kb on - strand, within MIT1002_04224 at 92.608 kb on - strand, within MIT1002_04224 at 92.613 kb on - strand, within MIT1002_04224 at 92.617 kb on + strand, within MIT1002_04224 at 92.618 kb on + strand, within MIT1002_04224 at 92.619 kb on - strand, within MIT1002_04224 at 92.625 kb on - strand, within MIT1002_04224 at 92.625 kb on - strand, within MIT1002_04224 at 92.626 kb on - strand, within MIT1002_04224 at 92.654 kb on + strand at 92.662 kb on + strand at 92.663 kb on - strand at 92.672 kb on + strand at 92.680 kb on - strand at 92.680 kb on - strand at 92.680 kb on - strand at 92.713 kb on + strand at 92.716 kb on - strand at 92.730 kb on + strand at 92.771 kb on - strand, within MIT1002_04225 at 92.844 kb on + strand, within MIT1002_04225 at 92.844 kb on + strand, within MIT1002_04225 at 92.852 kb on - strand, within MIT1002_04225 at 92.852 kb on - strand, within MIT1002_04225 at 92.861 kb on + strand, within MIT1002_04225 at 92.871 kb on + strand, within MIT1002_04225 at 92.871 kb on + strand, within MIT1002_04225 at 92.879 kb on - strand, within MIT1002_04225 at 92.896 kb on - strand, within MIT1002_04225 at 92.896 kb on - strand, within MIT1002_04225 at 92.982 kb on - strand, within MIT1002_04225 at 93.081 kb on + strand, within MIT1002_04225 at 93.114 kb on - strand, within MIT1002_04225 at 93.114 kb on - strand, within MIT1002_04225 at 93.160 kb on + strand, within MIT1002_04225 at 93.160 kb on + strand, within MIT1002_04225 at 93.168 kb on - strand, within MIT1002_04225 at 93.168 kb on - strand, within MIT1002_04225 at 93.246 kb on + strand, within MIT1002_04225 at 93.246 kb on + strand, within MIT1002_04225 at 93.246 kb on + strand, within MIT1002_04225 at 93.246 kb on + strand, within MIT1002_04225 at 93.246 kb on + strand, within MIT1002_04225 at 93.250 kb on + strand, within MIT1002_04225 at 93.254 kb on - strand, within MIT1002_04225 at 93.254 kb on - strand, within MIT1002_04225 at 93.254 kb on - strand, within MIT1002_04225 at 93.254 kb on - strand, within MIT1002_04225 at 93.254 kb on - strand, within MIT1002_04225 at 93.254 kb on - strand, within MIT1002_04225 at 93.254 kb on - strand, within MIT1002_04225 at 93.258 kb on - strand, within MIT1002_04225 at 93.259 kb on - strand, within MIT1002_04225 at 93.266 kb on - strand, within MIT1002_04225 at 93.268 kb on - strand, within MIT1002_04225 at 93.275 kb on + strand, within MIT1002_04225
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5 remove 90,934 + -0.5 90,952 + MIT1002_04222 0.11 -0.1 91,128 - MIT1002_04222 0.28 -0.9 91,135 + MIT1002_04222 0.29 -1.7 91,143 - MIT1002_04222 0.30 +0.6 91,143 - MIT1002_04222 0.30 +0.3 91,202 + MIT1002_04222 0.35 +0.3 91,209 - MIT1002_04222 0.36 -1.4 91,213 + MIT1002_04222 0.36 +0.7 91,220 - MIT1002_04222 0.37 -0.1 91,228 + MIT1002_04222 0.38 +0.1 91,228 + MIT1002_04222 0.38 +1.9 91,236 - MIT1002_04222 0.39 +0.2 91,236 - MIT1002_04222 0.39 -0.9 91,236 - MIT1002_04222 0.39 -1.8 91,236 - MIT1002_04222 0.39 -1.8 91,341 + MIT1002_04222 0.49 -2.3 91,342 + MIT1002_04222 0.49 -1.3 91,349 - MIT1002_04222 0.49 -2.8 91,349 - MIT1002_04222 0.49 -1.3 91,349 - MIT1002_04222 0.49 +0.3 91,349 - MIT1002_04222 0.49 +0.5 91,350 - MIT1002_04222 0.49 -0.3 91,413 - MIT1002_04222 0.55 +0.9 91,413 - MIT1002_04222 0.55 +1.8 91,413 - MIT1002_04222 0.55 -0.3 91,485 + MIT1002_04222 0.62 +0.2 91,500 + MIT1002_04222 0.64 +0.3 91,553 + MIT1002_04222 0.69 +0.4 91,623 + MIT1002_04222 0.76 -1.5 91,631 - MIT1002_04222 0.76 -1.0 91,631 - MIT1002_04222 0.76 +0.3 91,638 - MIT1002_04222 0.77 +0.7 91,642 + MIT1002_04222 0.77 -0.0 91,664 + MIT1002_04222 0.79 +0.6 91,671 + MIT1002_04222 0.80 +0.9 91,672 - MIT1002_04222 0.80 +0.2 91,694 + MIT1002_04222 0.82 -0.6 91,747 + MIT1002_04222 0.87 +0.3 91,776 + -0.1 91,776 + +0.3 91,776 + -0.1 91,776 + +0.6 91,784 - -1.0 91,817 - +0.4 91,922 - -0.3 92,057 + MIT1002_04223 0.37 +2.2 92,131 + MIT1002_04223 0.56 -1.5 92,193 + MIT1002_04223 0.73 -2.2 92,201 - MIT1002_04223 0.75 +0.4 92,309 + -0.3 92,311 + -1.6 92,319 + -0.2 92,321 + -3.5 92,377 - MIT1002_04224 0.16 -0.3 92,382 + MIT1002_04224 0.17 -1.4 92,402 - MIT1002_04224 0.22 -1.5 92,406 + MIT1002_04224 0.24 +0.8 92,416 + MIT1002_04224 0.26 +0.6 92,419 + MIT1002_04224 0.27 +0.5 92,424 + MIT1002_04224 0.28 -1.3 92,424 - MIT1002_04224 0.28 -0.6 92,435 + MIT1002_04224 0.31 +0.3 92,496 + MIT1002_04224 0.48 -0.5 92,504 - MIT1002_04224 0.50 +1.9 92,506 - MIT1002_04224 0.51 +0.3 92,506 - MIT1002_04224 0.51 -0.8 92,508 + MIT1002_04224 0.51 -1.2 92,516 - MIT1002_04224 0.53 -1.1 92,516 - MIT1002_04224 0.53 +0.1 92,538 + MIT1002_04224 0.59 -0.1 92,546 - MIT1002_04224 0.62 -1.6 92,595 + MIT1002_04224 0.75 +0.1 92,596 - MIT1002_04224 0.75 +0.2 92,608 - MIT1002_04224 0.78 -0.3 92,608 - MIT1002_04224 0.78 -0.2 92,613 - MIT1002_04224 0.80 +1.3 92,617 + MIT1002_04224 0.81 -0.5 92,618 + MIT1002_04224 0.81 -1.2 92,619 - MIT1002_04224 0.81 -2.1 92,625 - MIT1002_04224 0.83 -0.7 92,625 - MIT1002_04224 0.83 -0.3 92,626 - MIT1002_04224 0.83 -0.2 92,654 + +0.3 92,662 + +0.1 92,663 - +0.7 92,672 + -0.0 92,680 - +0.6 92,680 - +0.8 92,680 - -0.5 92,713 + -1.3 92,716 - -0.4 92,730 + -0.3 92,771 - MIT1002_04225 0.10 -0.2 92,844 + MIT1002_04225 0.18 +0.4 92,844 + MIT1002_04225 0.18 +0.1 92,852 - MIT1002_04225 0.18 +0.5 92,852 - MIT1002_04225 0.18 -0.1 92,861 + MIT1002_04225 0.19 -1.5 92,871 + MIT1002_04225 0.20 +0.4 92,871 + MIT1002_04225 0.20 +1.5 92,879 - MIT1002_04225 0.21 +0.3 92,896 - MIT1002_04225 0.23 -0.3 92,896 - MIT1002_04225 0.23 +0.2 92,982 - MIT1002_04225 0.32 +0.1 93,081 + MIT1002_04225 0.42 +1.4 93,114 - MIT1002_04225 0.45 -0.5 93,114 - MIT1002_04225 0.45 +0.5 93,160 + MIT1002_04225 0.50 -1.5 93,160 + MIT1002_04225 0.50 +0.2 93,168 - MIT1002_04225 0.51 +0.2 93,168 - MIT1002_04225 0.51 -0.0 93,246 + MIT1002_04225 0.59 +0.3 93,246 + MIT1002_04225 0.59 +0.3 93,246 + MIT1002_04225 0.59 +0.7 93,246 + MIT1002_04225 0.59 -0.5 93,246 + MIT1002_04225 0.59 -2.4 93,250 + MIT1002_04225 0.59 -0.3 93,254 - MIT1002_04225 0.59 +0.6 93,254 - MIT1002_04225 0.59 -0.3 93,254 - MIT1002_04225 0.59 -0.2 93,254 - MIT1002_04225 0.59 +0.3 93,254 - MIT1002_04225 0.59 -0.4 93,254 - MIT1002_04225 0.59 -0.6 93,254 - MIT1002_04225 0.59 +0.8 93,258 - MIT1002_04225 0.60 +1.6 93,259 - MIT1002_04225 0.60 +1.1 93,266 - MIT1002_04225 0.61 -1.6 93,268 - MIT1002_04225 0.61 +1.5 93,275 + MIT1002_04225 0.62 -1.4
Or see this region's nucleotide sequence