Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04127

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_04125 and MIT1002_04126 are separated by 6 nucleotidesMIT1002_04126 and MIT1002_04127 are separated by 27 nucleotidesMIT1002_04127 and MIT1002_04128 are separated by 97 nucleotides MIT1002_04125: MIT1002_04125 - DNA replication protein DnaC, at 4,626,978 to 4,627,805 _04125 MIT1002_04126: MIT1002_04126 - primosomal protein DnaI, at 4,627,812 to 4,628,480 _04126 MIT1002_04127: MIT1002_04127 - Sulfite reductase [NADPH] flavoprotein alpha-component, at 4,628,508 to 4,628,945 _04127 MIT1002_04128: MIT1002_04128 - tRNA modification GTPase MnmE, at 4,629,043 to 4,630,431 _04128 Position (kb) 4628 4629Strain fitness (log2 ratio) -2 -1 0 1at 4627.818 kb on - strandat 4628.565 kb on - strand, within MIT1002_04127at 4628.571 kb on - strand, within MIT1002_04127at 4628.683 kb on - strand, within MIT1002_04127at 4628.869 kb on - strand, within MIT1002_04127at 4628.912 kb on - strandat 4628.983 kb on + strandat 4628.999 kb on + strandat 4629.186 kb on - strand, within MIT1002_04128at 4629.213 kb on - strand, within MIT1002_04128at 4629.232 kb on - strand, within MIT1002_04128

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
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4,627,818 - -0.2
4,628,565 - MIT1002_04127 0.13 -2.3
4,628,571 - MIT1002_04127 0.14 +1.3
4,628,683 - MIT1002_04127 0.40 +0.9
4,628,869 - MIT1002_04127 0.82 -0.6
4,628,912 - +0.7
4,628,983 + -1.2
4,628,999 + -2.5
4,629,186 - MIT1002_04128 0.10 +0.1
4,629,213 - MIT1002_04128 0.12 +0.4
4,629,232 - MIT1002_04128 0.14 +0.4

Or see this region's nucleotide sequence