Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04063

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
4,563,284	-		MIT1002_04061	0.71	+0.1
4,563,292	+		MIT1002_04061	0.73	+0.7
4,563,293	+		MIT1002_04061	0.73	-0.1
4,563,314	-		MIT1002_04061	0.80	-1.4
4,563,352	-				-2.0
4,563,394	+				+2.3
4,563,449	-				+1.1
4,563,524	+		MIT1002_04062	0.15	+0.5
4,563,542	+		MIT1002_04062	0.20	-1.6
4,563,568	+		MIT1002_04062	0.26	+2.4
4,563,576	-		MIT1002_04062	0.28	+0.0
4,563,576	-		MIT1002_04062	0.28	+0.3
4,563,576	-		MIT1002_04062	0.28	-0.3
4,563,578	-		MIT1002_04062	0.29	+0.5
4,563,629	+		MIT1002_04062	0.42	-1.8
4,563,644	-		MIT1002_04062	0.46	-1.8
4,563,644	-		MIT1002_04062	0.46	-1.4
4,563,741	+		MIT1002_04062	0.70	+0.4
4,563,767	+		MIT1002_04062	0.77	-2.4
4,563,767	+		MIT1002_04062	0.77	-0.3
4,563,802	-		MIT1002_04062	0.86	-1.2
4,563,810	-		MIT1002_04062	0.88	-0.6
4,563,826	+				+0.1
4,563,830	-				+0.5
4,563,830	-				+1.4
4,563,832	+				+1.2
4,563,850	-				-2.4
4,563,982	-				-1.7
4,563,982	-				-0.1
4,564,275	+				-2.1
4,564,277	+				+1.6
4,564,277	+				+0.0
4,564,396	+		MIT1002_04063	0.18	-1.4
4,564,399	-		MIT1002_04063	0.19	+0.1
4,564,405	+		MIT1002_04063	0.19	+1.5
4,564,441	+		MIT1002_04063	0.23	+0.8
4,564,626	+		MIT1002_04063	0.45	+0.2
4,564,703	+		MIT1002_04063	0.54	+2.1
4,564,711	-		MIT1002_04063	0.55	-2.3
4,564,746	+		MIT1002_04063	0.59	+1.0
4,564,855	+		MIT1002_04063	0.72	+2.0
4,564,866	+		MIT1002_04063	0.73	+2.9
4,564,866	+		MIT1002_04063	0.73	-0.1
4,564,874	-		MIT1002_04063	0.74	-0.2
4,564,874	-		MIT1002_04063	0.74	+0.8
4,564,874	-		MIT1002_04063	0.74	+1.2
4,564,937	+		MIT1002_04063	0.81	+1.9
4,564,937	+		MIT1002_04063	0.81	-1.3
4,564,937	+		MIT1002_04063	0.81	+1.1
4,564,937	+		MIT1002_04063	0.81	-0.5
4,564,937	+		MIT1002_04063	0.81	+0.9
4,564,945	-		MIT1002_04063	0.82	-0.1
4,564,945	-		MIT1002_04063	0.82	+0.9
4,564,945	-		MIT1002_04063	0.82	+3.4
4,564,945	-		MIT1002_04063	0.82	-0.9
4,564,945	-		MIT1002_04063	0.82	+0.8
4,564,965	-		MIT1002_04063	0.84	-0.2
4,564,987	+		MIT1002_04063	0.87	-0.1
4,565,022	+				-1.4
4,565,028	+				+0.8
4,565,047	+				+0.5
4,565,084	+				+0.5
4,565,084	-				+2.8
4,565,112	+				+0.0
4,565,112	+				-0.9
4,565,112	+				-2.9
4,565,120	-				+1.2
4,565,120	-				-0.4
4,565,120	-				-2.1
4,565,120	-				-1.5
4,565,120	-				+2.7
4,565,120	-				-0.2
4,565,141	+				+0.1
4,565,155	+		MIT1002_04064	0.12	-0.2
4,565,196	-		MIT1002_04064	0.19	-0.4
4,565,203	-		MIT1002_04064	0.20	+0.7
4,565,227	+		MIT1002_04064	0.24	-0.0
4,565,239	-		MIT1002_04064	0.26	+0.3
4,565,241	-		MIT1002_04064	0.26	+0.7
4,565,287	+		MIT1002_04064	0.34	-0.2
4,565,295	-		MIT1002_04064	0.36	+0.3
4,565,333	+		MIT1002_04064	0.42	-2.3
4,565,399	+		MIT1002_04064	0.54	-1.0
4,565,407	+		MIT1002_04064	0.55	+3.0
4,565,438	+		MIT1002_04064	0.60	-1.0
4,565,439	+		MIT1002_04064	0.60	-1.0
4,565,446	-		MIT1002_04064	0.62	-0.4
4,565,572	-		MIT1002_04064	0.83	+0.9
4,565,574	+		MIT1002_04064	0.83	-1.1
4,565,596	-		MIT1002_04064	0.87	-1.1
4,565,743	+				-0.2
4,565,797	-				-0.2
4,565,856	+				-0.8
4,565,856	+				+0.1
4,565,856	+				-0.8
4,565,864	-				+0.7
4,565,915	-				-1.2
4,565,927	+				-0.4
4,565,975	+		MIT1002_04065	0.12	+0.9
4,565,993	-		MIT1002_04065	0.13	+0.8
4,566,048	-		MIT1002_04065	0.18	-0.2