Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04060

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
4,560,583	-				-0.1
4,560,621	-				-0.5
4,560,653	-				+0.1
4,560,659	-				-0.2
4,560,681	+				+0.3
4,560,735	+				-0.5
4,560,816	+		MIT1002_04059	0.20	-2.1
4,560,816	+		MIT1002_04059	0.20	-1.4
4,560,826	+		MIT1002_04059	0.23	-0.8
4,560,846	-		MIT1002_04059	0.28	+0.7
4,560,960	-		MIT1002_04059	0.55	-0.7
4,560,999	-		MIT1002_04059	0.64	-2.4
4,561,029	+		MIT1002_04059	0.71	-1.3
4,561,065	-		MIT1002_04059	0.80	-0.5
4,561,070	-		MIT1002_04059	0.81	+0.7
4,561,090	+		MIT1002_04059	0.86	-0.7
4,561,165	-				+2.2
4,561,215	+				-1.0
4,561,302	-				-1.9
4,561,361	+				-0.5
4,561,361	-				+0.8
4,561,523	-				-1.2
4,561,529	-				-0.6
4,561,587	-				-0.1
4,561,611	+				-0.1
4,561,652	-				-1.3
4,561,658	+				-1.5
4,561,658	+				+0.4
4,561,658	+				-0.0
4,561,666	-		MIT1002_04060	0.10	+0.6
4,561,666	-		MIT1002_04060	0.10	+1.6
4,561,666	-		MIT1002_04060	0.10	+1.4
4,561,666	-		MIT1002_04060	0.10	+0.7
4,561,666	-		MIT1002_04060	0.10	+0.1
4,561,666	-		MIT1002_04060	0.10	-0.2
4,561,666	-		MIT1002_04060	0.10	-1.9
4,561,688	-		MIT1002_04060	0.12	+0.4
4,561,853	+		MIT1002_04060	0.24	-0.5
4,561,853	+		MIT1002_04060	0.24	-0.2
4,561,853	+		MIT1002_04060	0.24	-0.4
4,561,854	+		MIT1002_04060	0.24	-0.8
4,561,861	-		MIT1002_04060	0.25	+1.0
4,561,899	+		MIT1002_04060	0.27	+1.8
4,561,907	-		MIT1002_04060	0.28	+1.2
4,561,964	+		MIT1002_04060	0.32	-3.4
4,561,964	+		MIT1002_04060	0.32	+0.1
4,561,972	-		MIT1002_04060	0.33	-0.9
4,562,012	+		MIT1002_04060	0.36	+0.2
4,562,035	-		MIT1002_04060	0.37	-0.2
4,562,056	+		MIT1002_04060	0.39	+1.8
4,562,136	+		MIT1002_04060	0.45	+1.5
4,562,136	+		MIT1002_04060	0.45	+0.0
4,562,264	+		MIT1002_04060	0.54	+1.1
4,562,272	-		MIT1002_04060	0.55	-1.1
4,562,280	-		MIT1002_04060	0.55	+0.3
4,562,382	-		MIT1002_04060	0.63	+1.4
4,562,382	-		MIT1002_04060	0.63	+0.7
4,562,418	+		MIT1002_04060	0.65	+1.5
4,562,437	-		MIT1002_04060	0.67	+0.5
4,562,451	+		MIT1002_04060	0.68	+0.4
4,562,516	-		MIT1002_04060	0.72	+0.3
4,562,547	-		MIT1002_04060	0.75	-1.5
4,562,549	-		MIT1002_04060	0.75	-0.5
4,562,552	-		MIT1002_04060	0.75	+0.9
4,562,570	-		MIT1002_04060	0.76	+0.9
4,562,654	+		MIT1002_04060	0.83	+1.3
4,562,802	-				-0.3
4,562,909	-				-0.1
4,563,019	-				-0.8
4,563,028	-				+0.7
4,563,042	+				-2.3
4,563,077	+				-0.1
4,563,085	-				+0.8
4,563,085	-				-1.3
4,563,085	-				-0.7
4,563,090	+				-0.5
4,563,098	-		MIT1002_04061	0.10	+1.9
4,563,156	-		MIT1002_04061	0.29	-1.3
4,563,181	-		MIT1002_04061	0.37	+0.1
4,563,284	-		MIT1002_04061	0.71	+0.1
4,563,292	+		MIT1002_04061	0.73	+0.7
4,563,293	+		MIT1002_04061	0.73	-0.1
4,563,314	-		MIT1002_04061	0.80	-1.4
4,563,352	-				-2.0
4,563,394	+				+2.3
4,563,449	-				+1.1
4,563,524	+		MIT1002_04062	0.15	+0.5
4,563,542	+		MIT1002_04062	0.20	-1.6
4,563,568	+		MIT1002_04062	0.26	+2.4
4,563,576	-		MIT1002_04062	0.28	+0.0
4,563,576	-		MIT1002_04062	0.28	+0.3
4,563,576	-		MIT1002_04062	0.28	-0.3
4,563,578	-		MIT1002_04062	0.29	+0.5
4,563,629	+		MIT1002_04062	0.42	-1.8
4,563,644	-		MIT1002_04062	0.46	-1.8
4,563,644	-		MIT1002_04062	0.46	-1.4
4,563,741	+		MIT1002_04062	0.70	+0.4
4,563,767	+		MIT1002_04062	0.77	-2.4
4,563,767	+		MIT1002_04062	0.77	-0.3
4,563,802	-		MIT1002_04062	0.86	-1.2
4,563,810	-		MIT1002_04062	0.88	-0.6
4,563,826	+				+0.1
4,563,830	-				+0.5
4,563,830	-				+1.4
4,563,832	+				+1.2
4,563,850	-				-2.4