Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04023 and MIT1002_04024 are separated by 121 nucleotides MIT1002_04024 and MIT1002_04025 are separated by 79 nucleotides MIT1002_04025 and MIT1002_04026 are separated by 1 nucleotides
MIT1002_04023: MIT1002_04023 - DNA-damage-inducible protein F, at 4,510,994 to 4,512,340
_04023
MIT1002_04024: MIT1002_04024 - Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase precursor, at 4,512,462 to 4,513,688
_04024
MIT1002_04025: MIT1002_04025 - TDP-fucosamine acetyltransferase, at 4,513,768 to 4,514,355
_04025
MIT1002_04026: MIT1002_04026 - BsSco, at 4,514,357 to 4,515,001
_04026
Position (kb) 4512
4513
4514 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4511.517 kb on - strand, within MIT1002_04023 at 4511.574 kb on - strand, within MIT1002_04023 at 4511.579 kb on - strand, within MIT1002_04023 at 4511.587 kb on - strand, within MIT1002_04023 at 4511.618 kb on - strand, within MIT1002_04023 at 4511.629 kb on - strand, within MIT1002_04023 at 4511.645 kb on + strand, within MIT1002_04023 at 4511.645 kb on + strand, within MIT1002_04023 at 4511.715 kb on + strand, within MIT1002_04023 at 4511.743 kb on + strand, within MIT1002_04023 at 4511.746 kb on - strand, within MIT1002_04023 at 4511.746 kb on - strand, within MIT1002_04023 at 4511.838 kb on - strand, within MIT1002_04023 at 4511.898 kb on + strand, within MIT1002_04023 at 4511.904 kb on + strand, within MIT1002_04023 at 4511.904 kb on + strand, within MIT1002_04023 at 4511.904 kb on + strand, within MIT1002_04023 at 4511.904 kb on + strand, within MIT1002_04023 at 4511.904 kb on + strand, within MIT1002_04023 at 4511.904 kb on + strand, within MIT1002_04023 at 4511.912 kb on - strand, within MIT1002_04023 at 4511.912 kb on - strand, within MIT1002_04023 at 4511.912 kb on - strand, within MIT1002_04023 at 4511.912 kb on - strand, within MIT1002_04023 at 4511.954 kb on + strand, within MIT1002_04023 at 4511.971 kb on - strand, within MIT1002_04023 at 4511.986 kb on + strand, within MIT1002_04023 at 4512.010 kb on + strand, within MIT1002_04023 at 4512.015 kb on + strand, within MIT1002_04023 at 4512.017 kb on + strand, within MIT1002_04023 at 4512.025 kb on - strand, within MIT1002_04023 at 4512.031 kb on - strand, within MIT1002_04023 at 4512.031 kb on - strand, within MIT1002_04023 at 4512.086 kb on + strand, within MIT1002_04023 at 4512.086 kb on + strand, within MIT1002_04023 at 4512.109 kb on - strand, within MIT1002_04023 at 4512.143 kb on + strand, within MIT1002_04023 at 4512.203 kb on - strand, within MIT1002_04023 at 4512.234 kb on - strand at 4512.235 kb on - strand at 4512.350 kb on + strand at 4512.365 kb on - strand at 4512.383 kb on - strand at 4512.514 kb on + strand at 4512.546 kb on + strand at 4512.562 kb on + strand at 4512.620 kb on - strand, within MIT1002_04024 at 4512.625 kb on + strand, within MIT1002_04024 at 4512.625 kb on + strand, within MIT1002_04024 at 4512.685 kb on + strand, within MIT1002_04024 at 4512.747 kb on + strand, within MIT1002_04024 at 4512.748 kb on - strand, within MIT1002_04024 at 4512.755 kb on - strand, within MIT1002_04024 at 4512.799 kb on + strand, within MIT1002_04024 at 4512.817 kb on + strand, within MIT1002_04024 at 4512.820 kb on - strand, within MIT1002_04024 at 4512.820 kb on - strand, within MIT1002_04024 at 4512.865 kb on - strand, within MIT1002_04024 at 4512.867 kb on - strand, within MIT1002_04024 at 4512.930 kb on + strand, within MIT1002_04024 at 4512.984 kb on - strand, within MIT1002_04024 at 4512.997 kb on + strand, within MIT1002_04024 at 4513.005 kb on - strand, within MIT1002_04024 at 4513.005 kb on - strand, within MIT1002_04024 at 4513.061 kb on + strand, within MIT1002_04024 at 4513.074 kb on - strand, within MIT1002_04024 at 4513.102 kb on + strand, within MIT1002_04024 at 4513.131 kb on + strand, within MIT1002_04024 at 4513.215 kb on + strand, within MIT1002_04024 at 4513.217 kb on + strand, within MIT1002_04024 at 4513.220 kb on - strand, within MIT1002_04024 at 4513.248 kb on + strand, within MIT1002_04024 at 4513.249 kb on - strand, within MIT1002_04024 at 4513.249 kb on - strand, within MIT1002_04024 at 4513.249 kb on - strand, within MIT1002_04024 at 4513.256 kb on - strand, within MIT1002_04024 at 4513.292 kb on - strand, within MIT1002_04024 at 4513.292 kb on - strand, within MIT1002_04024 at 4513.294 kb on + strand, within MIT1002_04024 at 4513.370 kb on + strand, within MIT1002_04024 at 4513.370 kb on + strand, within MIT1002_04024 at 4513.390 kb on - strand, within MIT1002_04024 at 4513.481 kb on + strand, within MIT1002_04024 at 4513.595 kb on - strand at 4513.597 kb on + strand at 4513.639 kb on + strand at 4513.640 kb on + strand at 4513.678 kb on + strand at 4513.683 kb on + strand at 4513.683 kb on + strand at 4513.683 kb on + strand at 4513.691 kb on - strand at 4513.691 kb on - strand at 4513.691 kb on - strand at 4513.691 kb on - strand at 4513.691 kb on - strand at 4513.691 kb on - strand at 4513.691 kb on - strand at 4513.823 kb on + strand at 4513.927 kb on - strand, within MIT1002_04025 at 4513.929 kb on + strand, within MIT1002_04025 at 4514.038 kb on + strand, within MIT1002_04025 at 4514.048 kb on + strand, within MIT1002_04025 at 4514.048 kb on + strand, within MIT1002_04025 at 4514.048 kb on + strand, within MIT1002_04025 at 4514.048 kb on + strand, within MIT1002_04025 at 4514.048 kb on + strand, within MIT1002_04025 at 4514.048 kb on + strand, within MIT1002_04025 at 4514.048 kb on + strand, within MIT1002_04025 at 4514.056 kb on - strand, within MIT1002_04025 at 4514.056 kb on - strand, within MIT1002_04025 at 4514.056 kb on - strand, within MIT1002_04025 at 4514.056 kb on - strand, within MIT1002_04025 at 4514.056 kb on - strand, within MIT1002_04025 at 4514.071 kb on - strand, within MIT1002_04025 at 4514.086 kb on + strand, within MIT1002_04025 at 4514.093 kb on - strand, within MIT1002_04025 at 4514.101 kb on + strand, within MIT1002_04025 at 4514.101 kb on + strand, within MIT1002_04025 at 4514.130 kb on - strand, within MIT1002_04025 at 4514.141 kb on + strand, within MIT1002_04025 at 4514.151 kb on - strand, within MIT1002_04025 at 4514.291 kb on - strand, within MIT1002_04025 at 4514.316 kb on - strand at 4514.368 kb on + strand at 4514.420 kb on + strand at 4514.420 kb on - strand at 4514.472 kb on - strand, within MIT1002_04026 at 4514.493 kb on - strand, within MIT1002_04026 at 4514.595 kb on - strand, within MIT1002_04026 at 4514.611 kb on + strand, within MIT1002_04026 at 4514.630 kb on + strand, within MIT1002_04026
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5 remove 4,511,517 - MIT1002_04023 0.39 +0.5 4,511,574 - MIT1002_04023 0.43 -0.5 4,511,579 - MIT1002_04023 0.43 +0.0 4,511,587 - MIT1002_04023 0.44 -0.7 4,511,618 - MIT1002_04023 0.46 -1.2 4,511,629 - MIT1002_04023 0.47 +0.5 4,511,645 + MIT1002_04023 0.48 +1.4 4,511,645 + MIT1002_04023 0.48 +0.7 4,511,715 + MIT1002_04023 0.54 -1.6 4,511,743 + MIT1002_04023 0.56 -0.0 4,511,746 - MIT1002_04023 0.56 +2.0 4,511,746 - MIT1002_04023 0.56 +2.1 4,511,838 - MIT1002_04023 0.63 +0.8 4,511,898 + MIT1002_04023 0.67 +1.3 4,511,904 + MIT1002_04023 0.68 -1.0 4,511,904 + MIT1002_04023 0.68 +1.6 4,511,904 + MIT1002_04023 0.68 +0.3 4,511,904 + MIT1002_04023 0.68 -0.7 4,511,904 + MIT1002_04023 0.68 +1.2 4,511,904 + MIT1002_04023 0.68 -1.9 4,511,912 - MIT1002_04023 0.68 -0.5 4,511,912 - MIT1002_04023 0.68 -1.1 4,511,912 - MIT1002_04023 0.68 -0.5 4,511,912 - MIT1002_04023 0.68 +0.8 4,511,954 + MIT1002_04023 0.71 -0.0 4,511,971 - MIT1002_04023 0.73 -1.0 4,511,986 + MIT1002_04023 0.74 -2.3 4,512,010 + MIT1002_04023 0.75 -2.8 4,512,015 + MIT1002_04023 0.76 +0.8 4,512,017 + MIT1002_04023 0.76 +0.3 4,512,025 - MIT1002_04023 0.77 +1.5 4,512,031 - MIT1002_04023 0.77 +1.2 4,512,031 - MIT1002_04023 0.77 +0.4 4,512,086 + MIT1002_04023 0.81 +0.5 4,512,086 + MIT1002_04023 0.81 -1.7 4,512,109 - MIT1002_04023 0.83 +0.4 4,512,143 + MIT1002_04023 0.85 -2.1 4,512,203 - MIT1002_04023 0.90 -0.9 4,512,234 - +1.8 4,512,235 - -0.2 4,512,350 + +0.8 4,512,365 - +0.5 4,512,383 - +1.6 4,512,514 + +0.9 4,512,546 + -1.7 4,512,562 + -0.7 4,512,620 - MIT1002_04024 0.13 -0.3 4,512,625 + MIT1002_04024 0.13 -0.1 4,512,625 + MIT1002_04024 0.13 -0.2 4,512,685 + MIT1002_04024 0.18 -1.4 4,512,747 + MIT1002_04024 0.23 -0.9 4,512,748 - MIT1002_04024 0.23 -1.3 4,512,755 - MIT1002_04024 0.24 -0.3 4,512,799 + MIT1002_04024 0.27 -2.5 4,512,817 + MIT1002_04024 0.29 -1.0 4,512,820 - MIT1002_04024 0.29 -2.0 4,512,820 - MIT1002_04024 0.29 -0.6 4,512,865 - MIT1002_04024 0.33 +1.4 4,512,867 - MIT1002_04024 0.33 -2.2 4,512,930 + MIT1002_04024 0.38 +0.4 4,512,984 - MIT1002_04024 0.43 +0.1 4,512,997 + MIT1002_04024 0.44 -0.9 4,513,005 - MIT1002_04024 0.44 -1.7 4,513,005 - MIT1002_04024 0.44 -0.6 4,513,061 + MIT1002_04024 0.49 +1.0 4,513,074 - MIT1002_04024 0.50 -0.1 4,513,102 + MIT1002_04024 0.52 +0.6 4,513,131 + MIT1002_04024 0.55 -1.4 4,513,215 + MIT1002_04024 0.61 -0.7 4,513,217 + MIT1002_04024 0.62 +0.3 4,513,220 - MIT1002_04024 0.62 -0.6 4,513,248 + MIT1002_04024 0.64 -0.3 4,513,249 - MIT1002_04024 0.64 -0.7 4,513,249 - MIT1002_04024 0.64 -0.6 4,513,249 - MIT1002_04024 0.64 +0.5 4,513,256 - MIT1002_04024 0.65 -0.3 4,513,292 - MIT1002_04024 0.68 -1.9 4,513,292 - MIT1002_04024 0.68 -0.9 4,513,294 + MIT1002_04024 0.68 -0.3 4,513,370 + MIT1002_04024 0.74 +2.4 4,513,370 + MIT1002_04024 0.74 -0.3 4,513,390 - MIT1002_04024 0.76 +0.0 4,513,481 + MIT1002_04024 0.83 -0.2 4,513,595 - -2.9 4,513,597 + -0.7 4,513,639 + -1.8 4,513,640 + +0.2 4,513,678 + -0.1 4,513,683 + +0.6 4,513,683 + -1.7 4,513,683 + -0.1 4,513,691 - -0.1 4,513,691 - +0.2 4,513,691 - -0.2 4,513,691 - -0.1 4,513,691 - -1.7 4,513,691 - -2.4 4,513,691 - +1.5 4,513,823 + +0.4 4,513,927 - MIT1002_04025 0.27 -0.2 4,513,929 + MIT1002_04025 0.27 -0.0 4,514,038 + MIT1002_04025 0.46 -1.1 4,514,048 + MIT1002_04025 0.48 -0.0 4,514,048 + MIT1002_04025 0.48 +1.2 4,514,048 + MIT1002_04025 0.48 +1.5 4,514,048 + MIT1002_04025 0.48 -1.0 4,514,048 + MIT1002_04025 0.48 +1.1 4,514,048 + MIT1002_04025 0.48 +0.9 4,514,048 + MIT1002_04025 0.48 +4.1 4,514,056 - MIT1002_04025 0.49 -1.0 4,514,056 - MIT1002_04025 0.49 -1.1 4,514,056 - MIT1002_04025 0.49 +0.3 4,514,056 - MIT1002_04025 0.49 -0.9 4,514,056 - MIT1002_04025 0.49 +0.3 4,514,071 - MIT1002_04025 0.52 -2.8 4,514,086 + MIT1002_04025 0.54 -1.3 4,514,093 - MIT1002_04025 0.55 +0.6 4,514,101 + MIT1002_04025 0.57 +1.3 4,514,101 + MIT1002_04025 0.57 +0.2 4,514,130 - MIT1002_04025 0.62 +1.9 4,514,141 + MIT1002_04025 0.63 -0.0 4,514,151 - MIT1002_04025 0.65 +0.7 4,514,291 - MIT1002_04025 0.89 -0.9 4,514,316 - +0.6 4,514,368 + -0.4 4,514,420 + -1.7 4,514,420 - -1.0 4,514,472 - MIT1002_04026 0.18 -1.9 4,514,493 - MIT1002_04026 0.21 -1.4 4,514,595 - MIT1002_04026 0.37 -0.4 4,514,611 + MIT1002_04026 0.39 -2.3 4,514,630 + MIT1002_04026 0.42 +0.3
Or see this region's nucleotide sequence