Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03919

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
4,393,142	+		MIT1002_03917	0.78	-0.5
4,393,150	-		MIT1002_03917	0.78	-0.4
4,393,150	-		MIT1002_03917	0.78	-1.1
4,393,204	+		MIT1002_03917	0.81	-0.2
4,393,204	+		MIT1002_03917	0.81	+0.8
4,393,216	+		MIT1002_03917	0.81	-1.7
4,393,234	+		MIT1002_03917	0.82	-1.0
4,393,294	-		MIT1002_03917	0.85	-1.8
4,393,294	-		MIT1002_03917	0.85	-1.3
4,393,375	-		MIT1002_03917	0.88	-2.2
4,393,387	+		MIT1002_03917	0.89	-0.8
4,393,395	-		MIT1002_03917	0.89	+0.7
4,393,413	-		MIT1002_03917	0.90	-0.3
4,393,421	-				+0.0
4,393,444	-				-0.0
4,393,479	+				+1.7
4,393,509	-				+1.1
4,393,513	+				-1.4
4,393,515	-				-0.4
4,393,521	-				-0.3
4,393,526	+				+2.0
4,393,531	+				+0.0
4,393,531	+				-1.3
4,393,539	-				-0.5
4,393,539	-				-0.2
4,393,588	-				+0.2
4,393,601	+				-1.2
4,393,601	+				-0.3
4,393,601	+				-0.3
4,393,601	+				-0.5
4,393,601	+				+1.1
4,393,609	-				-0.2
4,393,609	-				-0.2
4,393,609	-				+0.2
4,393,609	-				+3.0
4,393,609	-				-0.7
4,393,609	-				-0.7
4,393,609	-				-1.8
4,393,609	-				-0.6
4,393,609	-				+0.3
4,393,609	-				-0.1
4,393,627	-				-0.2
4,393,644	+				+1.0
4,393,644	+				-1.3
4,393,644	+				+0.1
4,393,644	+				-1.8
4,393,644	+				-0.3
4,393,652	-				-0.5
4,393,652	-				-1.9
4,393,652	-				-0.1
4,393,652	-				-0.6
4,393,652	-				+0.7
4,393,652	-				-2.3
4,393,667	+				+1.7
4,393,674	-				+2.5
4,393,697	+				-1.0
4,393,862	+		MIT1002_03918	0.26	+0.7
4,393,870	-		MIT1002_03918	0.30	-0.4
4,393,870	-		MIT1002_03918	0.30	+1.4
4,393,910	+		MIT1002_03918	0.52	-1.2
4,393,986	-				-1.0
4,394,006	+				+0.7
4,394,120	-				-0.1
4,394,189	+				+1.2
4,394,197	-				-0.6
4,394,221	+				+1.8
4,394,253	-				+0.3
4,394,345	-				+0.9
4,394,361	+		MIT1002_03919	0.10	+1.3
4,394,361	+		MIT1002_03919	0.10	+0.7
4,394,381	+		MIT1002_03919	0.11	+1.7
4,394,381	+		MIT1002_03919	0.11	+1.4
4,394,389	-		MIT1002_03919	0.11	+1.1
4,394,389	-		MIT1002_03919	0.11	+0.8
4,394,420	-		MIT1002_03919	0.12	+2.2
4,394,425	-		MIT1002_03919	0.12	+1.7
4,394,453	+		MIT1002_03919	0.13	+2.4
4,394,458	-		MIT1002_03919	0.13	+1.3
4,394,464	+		MIT1002_03919	0.14	+0.0
4,394,472	+		MIT1002_03919	0.14	+1.8
4,394,549	+		MIT1002_03919	0.16	+2.4
4,394,565	+		MIT1002_03919	0.17	+1.0
4,394,573	-		MIT1002_03919	0.17	+0.4
4,394,584	+		MIT1002_03919	0.17	+0.7
4,394,749	+		MIT1002_03919	0.23	+1.7
4,394,750	+		MIT1002_03919	0.23	+0.2
4,394,777	+		MIT1002_03919	0.24	+1.6
4,394,785	-		MIT1002_03919	0.24	+0.8
4,394,785	-		MIT1002_03919	0.24	+0.1
4,394,785	-		MIT1002_03919	0.24	+1.4
4,394,805	-		MIT1002_03919	0.24	+1.3
4,394,805	-		MIT1002_03919	0.24	+3.0
4,394,805	-		MIT1002_03919	0.24	+1.1
4,394,805	-		MIT1002_03919	0.24	+0.8
4,394,805	-		MIT1002_03919	0.24	+2.4
4,394,805	-		MIT1002_03919	0.24	+1.4
4,394,805	-		MIT1002_03919	0.24	+1.9
4,394,805	-		MIT1002_03919	0.24	+1.1
4,394,812	+		MIT1002_03919	0.25	+1.1
4,394,812	+		MIT1002_03919	0.25	+1.3
4,394,825	+		MIT1002_03919	0.25	+0.6
4,394,825	+		MIT1002_03919	0.25	+1.7
4,394,872	-		MIT1002_03919	0.27	+0.6
4,394,872	-		MIT1002_03919	0.27	-0.2
4,394,882	+		MIT1002_03919	0.27	+2.0
4,394,882	+		MIT1002_03919	0.27	+0.6
4,394,882	+		MIT1002_03919	0.27	+1.9
4,394,900	+		MIT1002_03919	0.27	+3.1
4,394,902	-		MIT1002_03919	0.27	+0.3
4,394,986	+		MIT1002_03919	0.30	+0.5
4,394,986	+		MIT1002_03919	0.30	-7.4
4,395,001	+		MIT1002_03919	0.31	+0.9
4,395,021	+		MIT1002_03919	0.31	+2.7
4,395,043	+		MIT1002_03919	0.32	-0.5
4,395,057	+		MIT1002_03919	0.32	+1.2
4,395,057	+		MIT1002_03919	0.32	+0.9
4,395,065	+		MIT1002_03919	0.33	+1.5
4,395,073	-		MIT1002_03919	0.33	+1.2
4,395,091	-		MIT1002_03919	0.33	+2.4
4,395,098	+		MIT1002_03919	0.34	+0.3
4,395,181	+		MIT1002_03919	0.36	+1.0
4,395,189	-		MIT1002_03919	0.37	+0.5
4,395,213	+		MIT1002_03919	0.37	+1.8
4,395,213	+		MIT1002_03919	0.37	+0.3
4,395,218	-		MIT1002_03919	0.37	+0.3
4,395,373	+		MIT1002_03919	0.42	+0.1
4,395,374	+		MIT1002_03919	0.42	-0.8
4,395,435	-		MIT1002_03919	0.44	+2.0
4,395,462	+		MIT1002_03919	0.45	+0.5
4,395,467	+		MIT1002_03919	0.45	+1.5
4,395,467	+		MIT1002_03919	0.45	+1.5
4,395,467	+		MIT1002_03919	0.45	-1.1
4,395,475	-		MIT1002_03919	0.46	+1.3
4,395,506	+		MIT1002_03919	0.47	+0.7
4,395,571	-		MIT1002_03919	0.49	+0.9
4,395,582	-		MIT1002_03919	0.49	+2.5
4,395,589	-		MIT1002_03919	0.49	+0.4
4,395,600	+		MIT1002_03919	0.50	+0.7
4,395,657	+		MIT1002_03919	0.51	+1.5
4,395,665	-		MIT1002_03919	0.52	+0.4
4,395,677	-		MIT1002_03919	0.52	+0.8
4,395,677	-		MIT1002_03919	0.52	+2.4
4,395,677	-		MIT1002_03919	0.52	+1.4
4,395,696	+		MIT1002_03919	0.53	+1.7
4,395,696	+		MIT1002_03919	0.53	+1.4
4,395,704	-		MIT1002_03919	0.53	+1.8
4,395,706	+		MIT1002_03919	0.53	+1.6
4,395,789	-		MIT1002_03919	0.55	+2.5
4,395,796	+		MIT1002_03919	0.56	-0.8
4,395,840	+		MIT1002_03919	0.57	+1.5
4,395,883	+		MIT1002_03919	0.58	+2.0
4,395,906	-		MIT1002_03919	0.59	+1.3
4,395,914	+		MIT1002_03919	0.59	+1.5
4,395,956	-		MIT1002_03919	0.61	+1.2
4,395,968	-		MIT1002_03919	0.61	+2.1
4,396,093	+		MIT1002_03919	0.65	+1.6
4,396,101	-		MIT1002_03919	0.65	+2.2
4,396,156	+		MIT1002_03919	0.67	+0.8
4,396,174	-		MIT1002_03919	0.68	+0.4
4,396,213	-		MIT1002_03919	0.69	+2.4
4,396,257	+		MIT1002_03919	0.70	+2.2
4,396,289	+		MIT1002_03919	0.71	+0.4
4,396,308	-		MIT1002_03919	0.72	-1.6
4,396,372	+		MIT1002_03919	0.74	+1.1
4,396,380	-		MIT1002_03919	0.74	+1.5
4,396,441	+		MIT1002_03919	0.76	-1.1
4,396,449	-		MIT1002_03919	0.76	+2.6
4,396,694	+		MIT1002_03919	0.84	+1.6
4,396,722	+		MIT1002_03919	0.85	+1.2
4,396,730	-		MIT1002_03919	0.85	+1.8
4,396,846	+		MIT1002_03919	0.89	-1.5
4,396,846	+		MIT1002_03919	0.89	+0.2
4,396,846	+		MIT1002_03919	0.89	+1.3
4,396,846	+		MIT1002_03919	0.89	-0.2
4,396,846	+		MIT1002_03919	0.89	+1.6
4,396,854	-		MIT1002_03919	0.89	-0.5
4,396,854	-		MIT1002_03919	0.89	+0.7
4,396,859	-		MIT1002_03919	0.89	+0.4
4,396,952	-				+1.3
4,396,952	-				-0.5
4,396,999	+				+1.7
4,397,034	+				+1.7
4,397,035	-				+2.1
4,397,042	-				-2.2
4,397,044	+				-1.8
4,397,061	-				+1.2
4,397,069	+				+1.4
4,397,077	-				+0.7
4,397,093	+				+1.3
4,397,106	-				+1.4
4,397,115	+				+1.5
4,397,115	+				+2.6
4,397,115	+				+0.4
4,397,121	-				+0.4
4,397,121	-				+1.6
4,397,123	-				+0.7
4,397,132	+				+0.5
4,397,255	+				+0.4
4,397,256	+				+1.2
4,397,263	-				-1.5
4,397,264	-				-1.0
4,397,308	-				+0.3
4,397,423	+				+0.5
4,397,423	+				-1.9
4,397,431	-				+2.1
4,397,498	+		MIT1002_03920	0.15	+1.0
4,397,517	-		MIT1002_03920	0.18	+2.1
4,397,555	-		MIT1002_03920	0.25	-0.2
4,397,612	+		MIT1002_03920	0.35	+1.2
4,397,647	-		MIT1002_03920	0.40	+1.7
4,397,647	-		MIT1002_03920	0.40	-1.9
4,397,649	+		MIT1002_03920	0.41	+2.2
4,397,649	+		MIT1002_03920	0.41	+2.3
4,397,664	-		MIT1002_03920	0.43	+1.6
4,397,664	-		MIT1002_03920	0.43	+0.9
4,397,666	+		MIT1002_03920	0.44	+1.2
4,397,698	-		MIT1002_03920	0.49	-1.1
4,397,730	+		MIT1002_03920	0.54	+1.4
4,397,789	+		MIT1002_03920	0.64	+0.6
4,397,792	-		MIT1002_03920	0.65	-1.1
4,397,814	+		MIT1002_03920	0.69	+0.2
4,397,814	+		MIT1002_03920	0.69	+1.9
4,397,879	-		MIT1002_03920	0.80	+1.4
4,397,932	+		MIT1002_03920	0.89	+1.2
4,397,932	+		MIT1002_03920	0.89	+0.1
4,397,932	+		MIT1002_03920	0.89	+2.4
4,397,940	-				+0.1
4,397,962	-				-3.4
4,397,967	-				-2.3
4,397,967	-				+0.4
4,397,983	-				+1.5
4,397,983	-				-2.7
4,397,996	-				-5.2
4,397,996	-				-2.3
4,398,043	+				-3.4
4,398,045	+				-3.7
4,398,051	+				-4.0
4,398,053	+				-2.9
4,398,061	-				-3.8
4,398,086	-				-6.1