Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03911

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
4,383,945	+		MIT1002_03910	0.73	+0.2
4,383,978	-		MIT1002_03910	0.74	+0.7
4,384,022	+		MIT1002_03910	0.76	+0.7
4,384,030	-		MIT1002_03910	0.76	+0.3
4,384,050	+		MIT1002_03910	0.77	+1.0
4,384,068	+		MIT1002_03910	0.77	+2.6
4,384,098	-		MIT1002_03910	0.78	+1.3
4,384,144	+		MIT1002_03910	0.80	+1.6
4,384,159	+		MIT1002_03910	0.80	-0.5
4,384,195	+		MIT1002_03910	0.82	+1.6
4,384,219	+		MIT1002_03910	0.82	+0.8
4,384,227	-		MIT1002_03910	0.83	-0.5
4,384,245	-		MIT1002_03910	0.83	+1.5
4,384,258	-		MIT1002_03910	0.84	+2.5
4,384,292	-		MIT1002_03910	0.85	+1.0
4,384,300	+		MIT1002_03910	0.85	+0.2
4,384,330	+		MIT1002_03910	0.86	+0.7
4,384,330	+		MIT1002_03910	0.86	+1.7
4,384,330	+		MIT1002_03910	0.86	+2.1
4,384,330	+		MIT1002_03910	0.86	+1.4
4,384,338	-		MIT1002_03910	0.86	+1.5
4,384,338	-		MIT1002_03910	0.86	+1.2
4,384,338	-		MIT1002_03910	0.86	+0.3
4,384,338	-		MIT1002_03910	0.86	+0.7
4,384,338	-		MIT1002_03910	0.86	+1.4
4,384,338	-		MIT1002_03910	0.86	+1.0
4,384,338	-		MIT1002_03910	0.86	+1.7
4,384,498	+				+2.2
4,384,524	-				+0.1
4,384,524	-				+1.9
4,384,524	-				+0.5
4,384,524	-				+2.3
4,384,618	+				+1.9
4,384,625	-				+0.5
4,384,625	-				-1.0
4,384,625	-				-0.9
4,384,626	-				+1.4
4,384,626	-				+2.3
4,384,626	-				+1.2
4,384,637	-				+0.5
4,384,637	-				+1.2
4,384,680	+				+0.1
4,384,680	+				-0.5
4,384,828	+				+1.5
4,384,867	-				-0.4
4,384,873	+				+0.8
4,384,892	-				+1.6
4,384,917	-				+1.6
4,384,956	-				-0.2
4,385,018	+		MIT1002_03911	0.13	-1.7
4,385,020	+		MIT1002_03911	0.13	+0.8
4,385,095	-		MIT1002_03911	0.18	+1.1
4,385,132	-		MIT1002_03911	0.20	+0.8
4,385,143	-		MIT1002_03911	0.21	+0.9
4,385,179	+		MIT1002_03911	0.23	+1.3
4,385,246	+		MIT1002_03911	0.27	+0.9
4,385,340	+		MIT1002_03911	0.33	+2.4
4,385,430	+		MIT1002_03911	0.39	+1.6
4,385,454	-		MIT1002_03911	0.41	+2.1
4,385,519	-		MIT1002_03911	0.45	-0.3
4,385,521	-		MIT1002_03911	0.45	+0.8
4,385,524	+		MIT1002_03911	0.45	+1.6
4,385,548	-		MIT1002_03911	0.47	+1.3
4,385,569	-		MIT1002_03911	0.48	+1.4
4,385,576	-		MIT1002_03911	0.49	+2.2
4,385,580	+		MIT1002_03911	0.49	+0.5
4,385,580	+		MIT1002_03911	0.49	+1.4
4,385,588	-		MIT1002_03911	0.49	+1.2
4,385,588	-		MIT1002_03911	0.49	+1.9
4,385,624	-		MIT1002_03911	0.52	+0.9
4,385,626	+		MIT1002_03911	0.52	-0.0
4,385,627	-		MIT1002_03911	0.52	-0.6
4,385,645	+		MIT1002_03911	0.53	+3.1
4,385,659	+		MIT1002_03911	0.54	+0.4
4,385,676	+		MIT1002_03911	0.55	+1.4
4,385,677	+		MIT1002_03911	0.55	+1.0
4,385,677	+		MIT1002_03911	0.55	+0.7
4,385,684	-		MIT1002_03911	0.55	+2.4
4,385,685	-		MIT1002_03911	0.55	+0.5
4,385,687	+		MIT1002_03911	0.56	+0.8
4,385,687	+		MIT1002_03911	0.56	+1.7
4,385,715	+		MIT1002_03911	0.57	+2.4
4,385,716	-		MIT1002_03911	0.57	+0.6
4,385,723	-		MIT1002_03911	0.58	+1.9
4,385,730	+		MIT1002_03911	0.58	-0.0
4,385,730	+		MIT1002_03911	0.58	-4.0
4,385,738	-		MIT1002_03911	0.59	+1.9
4,385,738	-		MIT1002_03911	0.59	+0.6
4,385,793	-		MIT1002_03911	0.62	+2.1
4,385,877	-		MIT1002_03911	0.68	+0.5
4,385,895	-		MIT1002_03911	0.69	-2.5
4,385,898	+		MIT1002_03911	0.69	+0.6
4,385,926	+		MIT1002_03911	0.71	+0.5
4,385,936	+		MIT1002_03911	0.71	+2.4
4,385,985	-		MIT1002_03911	0.75	+1.7
4,386,050	+		MIT1002_03911	0.79	-0.1
4,386,078	+		MIT1002_03911	0.80	+1.7
4,386,088	+		MIT1002_03911	0.81	+3.2
4,386,134	+		MIT1002_03911	0.84	+0.3
4,386,204	+		MIT1002_03911	0.89	+1.8
4,386,204	+		MIT1002_03911	0.89	+1.2
4,386,212	-		MIT1002_03911	0.89	+1.0
4,386,212	-		MIT1002_03911	0.89	+2.2
4,386,212	-		MIT1002_03911	0.89	+1.7
4,386,212	-		MIT1002_03911	0.89	+1.1
4,386,214	+		MIT1002_03911	0.89	+2.4
4,386,217	-		MIT1002_03911	0.89	+1.5
4,386,219	+		MIT1002_03911	0.89	-0.2
4,386,222	-		MIT1002_03911	0.90	+1.1
4,386,234	-				+2.4
4,386,279	+				+0.9
4,386,324	+				+2.7
4,386,408	-				-1.5
4,386,504	-		MIT1002_03912	0.13	+0.7
4,386,513	+		MIT1002_03912	0.14	+0.4
4,386,570	+		MIT1002_03912	0.22	+1.3
4,386,578	-		MIT1002_03912	0.23	+2.1
4,386,603	+		MIT1002_03912	0.26	+0.2
4,386,654	-		MIT1002_03912	0.33	+1.0
4,386,661	-		MIT1002_03912	0.34	+1.3
4,386,678	-		MIT1002_03912	0.36	+0.5
4,386,726	+		MIT1002_03912	0.42	+0.4
4,386,795	+		MIT1002_03912	0.52	+1.4
4,386,813	-		MIT1002_03912	0.54	+2.6
4,386,818	-		MIT1002_03912	0.55	+1.3
4,386,906	-		MIT1002_03912	0.67	+1.3
4,386,906	-		MIT1002_03912	0.67	+1.0
4,386,914	+		MIT1002_03912	0.68	+0.7
4,386,955	+		MIT1002_03912	0.73	+1.0
4,386,965	+		MIT1002_03912	0.75	+2.6
4,386,965	+		MIT1002_03912	0.75	+2.6
4,386,967	+		MIT1002_03912	0.75	+2.3
4,386,973	-		MIT1002_03912	0.76	-0.2
4,386,975	-		MIT1002_03912	0.76	+1.1
4,386,975	-		MIT1002_03912	0.76	+2.4
4,387,000	+		MIT1002_03912	0.79	+1.2
4,387,005	+		MIT1002_03912	0.80	-0.2
4,387,067	-		MIT1002_03912	0.88	+0.5
4,387,067	-		MIT1002_03912	0.88	+1.6
4,387,083	+				-0.1
4,387,196	+				-1.8
4,387,205	-		MIT1002_03913	0.10	-1.8
4,387,274	+		MIT1002_03913	0.20	-3.1
4,387,302	+		MIT1002_03913	0.24	-1.5
4,387,302	+		MIT1002_03913	0.24	-1.6
4,387,302	+		MIT1002_03913	0.24	-0.9
4,387,310	-		MIT1002_03913	0.25	-2.8
4,387,315	+		MIT1002_03913	0.26	-1.5
4,387,317	+		MIT1002_03913	0.26	-0.8
4,387,317	+		MIT1002_03913	0.26	-3.4
4,387,317	+		MIT1002_03913	0.26	-4.0
4,387,323	-		MIT1002_03913	0.27	-1.8
4,387,323	-		MIT1002_03913	0.27	-3.4
4,387,323	-		MIT1002_03913	0.27	-4.0
4,387,325	-		MIT1002_03913	0.27	-1.6