Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03894

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_03893 and MIT1002_03894 are separated by 19 nucleotidesMIT1002_03894 and MIT1002_03895 are separated by 124 nucleotides MIT1002_03893: MIT1002_03893 - Autoinducer 2 sensor kinase/phosphatase LuxQ, at 4,359,785 to 4,361,710 _03893 MIT1002_03894: MIT1002_03894 - ABC-type uncharacterized transport system, periplasmic component, at 4,361,730 to 4,362,752 _03894 MIT1002_03895: MIT1002_03895 - Alkanal monooxygenase alpha chain, at 4,362,877 to 4,363,863 _03895 Position (kb) 4361 4362 4363Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4360.874 kb on + strand, within MIT1002_03893at 4360.884 kb on - strand, within MIT1002_03893at 4360.894 kb on - strand, within MIT1002_03893at 4360.967 kb on + strand, within MIT1002_03893at 4361.018 kb on - strand, within MIT1002_03893at 4361.038 kb on + strand, within MIT1002_03893at 4361.215 kb on - strand, within MIT1002_03893at 4361.308 kb on + strand, within MIT1002_03893at 4361.316 kb on - strand, within MIT1002_03893at 4361.385 kb on + strand, within MIT1002_03893at 4361.393 kb on - strand, within MIT1002_03893at 4361.398 kb on - strand, within MIT1002_03893at 4361.417 kb on - strand, within MIT1002_03893at 4361.443 kb on - strand, within MIT1002_03893at 4361.462 kb on - strand, within MIT1002_03893at 4361.472 kb on - strand, within MIT1002_03893at 4361.510 kb on + strand, within MIT1002_03893at 4361.510 kb on - strand, within MIT1002_03893at 4361.518 kb on - strandat 4361.533 kb on + strandat 4361.563 kb on + strandat 4361.563 kb on + strandat 4361.634 kb on + strandat 4361.634 kb on + strandat 4361.634 kb on + strandat 4361.642 kb on - strandat 4361.642 kb on - strandat 4361.642 kb on - strandat 4361.642 kb on - strandat 4361.721 kb on + strandat 4361.821 kb on + strandat 4361.831 kb on - strandat 4361.853 kb on - strand, within MIT1002_03894at 4361.998 kb on + strand, within MIT1002_03894at 4361.998 kb on + strand, within MIT1002_03894at 4362.038 kb on + strand, within MIT1002_03894at 4362.038 kb on + strand, within MIT1002_03894at 4362.038 kb on + strand, within MIT1002_03894at 4362.046 kb on - strand, within MIT1002_03894at 4362.046 kb on - strand, within MIT1002_03894at 4362.127 kb on - strand, within MIT1002_03894at 4362.133 kb on + strand, within MIT1002_03894at 4362.136 kb on + strand, within MIT1002_03894at 4362.136 kb on + strand, within MIT1002_03894at 4362.169 kb on - strand, within MIT1002_03894at 4362.232 kb on - strand, within MIT1002_03894at 4362.264 kb on + strand, within MIT1002_03894at 4362.264 kb on + strand, within MIT1002_03894at 4362.265 kb on + strand, within MIT1002_03894at 4362.267 kb on + strand, within MIT1002_03894at 4362.273 kb on - strand, within MIT1002_03894at 4362.286 kb on + strand, within MIT1002_03894at 4362.301 kb on + strand, within MIT1002_03894at 4362.411 kb on - strand, within MIT1002_03894at 4362.464 kb on - strand, within MIT1002_03894at 4362.536 kb on + strand, within MIT1002_03894at 4362.536 kb on + strand, within MIT1002_03894at 4362.551 kb on - strand, within MIT1002_03894at 4362.583 kb on + strand, within MIT1002_03894at 4362.591 kb on - strand, within MIT1002_03894at 4362.736 kb on + strandat 4362.755 kb on + strandat 4362.763 kb on - strandat 4362.769 kb on - strandat 4362.774 kb on - strandat 4362.846 kb on + strandat 4362.927 kb on - strandat 4363.008 kb on + strand, within MIT1002_03895at 4363.008 kb on + strand, within MIT1002_03895at 4363.016 kb on - strand, within MIT1002_03895at 4363.030 kb on + strand, within MIT1002_03895at 4363.030 kb on + strand, within MIT1002_03895at 4363.030 kb on + strand, within MIT1002_03895at 4363.030 kb on + strand, within MIT1002_03895at 4363.038 kb on - strand, within MIT1002_03895at 4363.088 kb on + strand, within MIT1002_03895at 4363.088 kb on + strand, within MIT1002_03895at 4363.197 kb on + strand, within MIT1002_03895at 4363.249 kb on - strand, within MIT1002_03895at 4363.284 kb on - strand, within MIT1002_03895at 4363.310 kb on + strand, within MIT1002_03895at 4363.336 kb on + strand, within MIT1002_03895at 4363.338 kb on + strand, within MIT1002_03895at 4363.338 kb on + strand, within MIT1002_03895at 4363.338 kb on + strand, within MIT1002_03895at 4363.338 kb on + strand, within MIT1002_03895at 4363.346 kb on - strand, within MIT1002_03895at 4363.346 kb on - strand, within MIT1002_03895at 4363.348 kb on + strand, within MIT1002_03895at 4363.348 kb on + strand, within MIT1002_03895at 4363.348 kb on + strand, within MIT1002_03895at 4363.348 kb on + strand, within MIT1002_03895at 4363.348 kb on + strand, within MIT1002_03895at 4363.348 kb on + strand, within MIT1002_03895at 4363.348 kb on + strand, within MIT1002_03895at 4363.348 kb on + strand, within MIT1002_03895at 4363.348 kb on + strand, within MIT1002_03895at 4363.348 kb on + strand, within MIT1002_03895at 4363.354 kb on - strand, within MIT1002_03895at 4363.354 kb on - strand, within MIT1002_03895at 4363.356 kb on - strand, within MIT1002_03895at 4363.356 kb on - strand, within MIT1002_03895at 4363.356 kb on - strand, within MIT1002_03895at 4363.356 kb on - strand, within MIT1002_03895at 4363.356 kb on - strand, within MIT1002_03895at 4363.356 kb on - strand, within MIT1002_03895at 4363.356 kb on - strand, within MIT1002_03895at 4363.356 kb on - strand, within MIT1002_03895at 4363.356 kb on - strand, within MIT1002_03895at 4363.356 kb on - strand, within MIT1002_03895at 4363.369 kb on + strand, within MIT1002_03895at 4363.375 kb on + strand, within MIT1002_03895at 4363.438 kb on - strand, within MIT1002_03895at 4363.438 kb on - strand, within MIT1002_03895at 4363.438 kb on - strand, within MIT1002_03895at 4363.441 kb on + strand, within MIT1002_03895at 4363.441 kb on + strand, within MIT1002_03895at 4363.482 kb on - strand, within MIT1002_03895at 4363.552 kb on - strand, within MIT1002_03895at 4363.552 kb on - strand, within MIT1002_03895at 4363.583 kb on + strand, within MIT1002_03895at 4363.583 kb on + strand, within MIT1002_03895at 4363.591 kb on - strand, within MIT1002_03895at 4363.591 kb on - strand, within MIT1002_03895at 4363.591 kb on - strand, within MIT1002_03895at 4363.601 kb on - strand, within MIT1002_03895at 4363.601 kb on - strand, within MIT1002_03895at 4363.601 kb on - strand, within MIT1002_03895at 4363.626 kb on + strand, within MIT1002_03895at 4363.634 kb on - strand, within MIT1002_03895at 4363.655 kb on - strand, within MIT1002_03895at 4363.655 kb on - strand, within MIT1002_03895at 4363.685 kb on - strand, within MIT1002_03895at 4363.694 kb on - strand, within MIT1002_03895at 4363.711 kb on + strand, within MIT1002_03895at 4363.715 kb on + strand, within MIT1002_03895

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
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4,360,874 + MIT1002_03893 0.57 +0.6
4,360,884 - MIT1002_03893 0.57 +1.9
4,360,894 - MIT1002_03893 0.58 +2.0
4,360,967 + MIT1002_03893 0.61 -0.8
4,361,018 - MIT1002_03893 0.64 +2.2
4,361,038 + MIT1002_03893 0.65 -1.6
4,361,215 - MIT1002_03893 0.74 +1.1
4,361,308 + MIT1002_03893 0.79 +0.9
4,361,316 - MIT1002_03893 0.79 +0.3
4,361,385 + MIT1002_03893 0.83 +0.4
4,361,393 - MIT1002_03893 0.83 +1.0
4,361,398 - MIT1002_03893 0.84 +1.3
4,361,417 - MIT1002_03893 0.85 +1.2
4,361,443 - MIT1002_03893 0.86 +1.3
4,361,462 - MIT1002_03893 0.87 +0.3
4,361,472 - MIT1002_03893 0.88 -0.5
4,361,510 + MIT1002_03893 0.90 +1.2
4,361,510 - MIT1002_03893 0.90 +1.3
4,361,518 - +0.7
4,361,533 + +0.4
4,361,563 + +1.2
4,361,563 + +1.2
4,361,634 + +1.5
4,361,634 + +0.3
4,361,634 + +0.9
4,361,642 - +0.8
4,361,642 - +0.1
4,361,642 - +0.3
4,361,642 - +3.3
4,361,721 + +0.6
4,361,821 + +0.8
4,361,831 - -0.6
4,361,853 - MIT1002_03894 0.12 +0.6
4,361,998 + MIT1002_03894 0.26 +1.7
4,361,998 + MIT1002_03894 0.26 +1.3
4,362,038 + MIT1002_03894 0.30 +0.4
4,362,038 + MIT1002_03894 0.30 -0.1
4,362,038 + MIT1002_03894 0.30 +0.5
4,362,046 - MIT1002_03894 0.31 +0.7
4,362,046 - MIT1002_03894 0.31 -1.6
4,362,127 - MIT1002_03894 0.39 +0.4
4,362,133 + MIT1002_03894 0.39 +0.4
4,362,136 + MIT1002_03894 0.40 +0.9
4,362,136 + MIT1002_03894 0.40 -1.6
4,362,169 - MIT1002_03894 0.43 +0.6
4,362,232 - MIT1002_03894 0.49 -1.7
4,362,264 + MIT1002_03894 0.52 +0.1
4,362,264 + MIT1002_03894 0.52 +1.1
4,362,265 + MIT1002_03894 0.52 -0.6
4,362,267 + MIT1002_03894 0.52 +1.0
4,362,273 - MIT1002_03894 0.53 +0.6
4,362,286 + MIT1002_03894 0.54 +2.1
4,362,301 + MIT1002_03894 0.56 +2.0
4,362,411 - MIT1002_03894 0.67 +2.5
4,362,464 - MIT1002_03894 0.72 +0.6
4,362,536 + MIT1002_03894 0.79 +0.4
4,362,536 + MIT1002_03894 0.79 +1.1
4,362,551 - MIT1002_03894 0.80 -1.2
4,362,583 + MIT1002_03894 0.83 -0.1
4,362,591 - MIT1002_03894 0.84 +0.1
4,362,736 + +0.2
4,362,755 + +0.9
4,362,763 - +0.8
4,362,769 - +0.9
4,362,774 - +1.4
4,362,846 + -0.6
4,362,927 - -2.1
4,363,008 + MIT1002_03895 0.13 -1.5
4,363,008 + MIT1002_03895 0.13 -0.1
4,363,016 - MIT1002_03895 0.14 -1.1
4,363,030 + MIT1002_03895 0.16 -1.2
4,363,030 + MIT1002_03895 0.16 -1.4
4,363,030 + MIT1002_03895 0.16 -1.6
4,363,030 + MIT1002_03895 0.16 +0.9
4,363,038 - MIT1002_03895 0.16 +0.6
4,363,088 + MIT1002_03895 0.21 +0.5
4,363,088 + MIT1002_03895 0.21 -1.3
4,363,197 + MIT1002_03895 0.32 +0.4
4,363,249 - MIT1002_03895 0.38 +0.8
4,363,284 - MIT1002_03895 0.41 +1.7
4,363,310 + MIT1002_03895 0.44 -0.7
4,363,336 + MIT1002_03895 0.47 +0.6
4,363,338 + MIT1002_03895 0.47 +0.3
4,363,338 + MIT1002_03895 0.47 -2.1
4,363,338 + MIT1002_03895 0.47 -0.7
4,363,338 + MIT1002_03895 0.47 -0.3
4,363,346 - MIT1002_03895 0.48 -0.7
4,363,346 - MIT1002_03895 0.48 -0.8
4,363,348 + MIT1002_03895 0.48 -0.6
4,363,348 + MIT1002_03895 0.48 +0.1
4,363,348 + MIT1002_03895 0.48 -0.7
4,363,348 + MIT1002_03895 0.48 -2.5
4,363,348 + MIT1002_03895 0.48 -0.7
4,363,348 + MIT1002_03895 0.48 +0.3
4,363,348 + MIT1002_03895 0.48 -0.2
4,363,348 + MIT1002_03895 0.48 +0.2
4,363,348 + MIT1002_03895 0.48 +1.0
4,363,348 + MIT1002_03895 0.48 +0.4
4,363,354 - MIT1002_03895 0.48 +0.4
4,363,354 - MIT1002_03895 0.48 +0.0
4,363,356 - MIT1002_03895 0.49 +0.8
4,363,356 - MIT1002_03895 0.49 -1.0
4,363,356 - MIT1002_03895 0.49 -0.2
4,363,356 - MIT1002_03895 0.49 +1.1
4,363,356 - MIT1002_03895 0.49 -2.3
4,363,356 - MIT1002_03895 0.49 -0.7
4,363,356 - MIT1002_03895 0.49 -1.1
4,363,356 - MIT1002_03895 0.49 +0.3
4,363,356 - MIT1002_03895 0.49 +0.7
4,363,356 - MIT1002_03895 0.49 +0.6
4,363,369 + MIT1002_03895 0.50 -1.3
4,363,375 + MIT1002_03895 0.50 +0.7
4,363,438 - MIT1002_03895 0.57 +0.2
4,363,438 - MIT1002_03895 0.57 +0.0
4,363,438 - MIT1002_03895 0.57 +0.7
4,363,441 + MIT1002_03895 0.57 +0.9
4,363,441 + MIT1002_03895 0.57 +1.3
4,363,482 - MIT1002_03895 0.61 -0.8
4,363,552 - MIT1002_03895 0.68 +1.6
4,363,552 - MIT1002_03895 0.68 -0.8
4,363,583 + MIT1002_03895 0.72 +0.4
4,363,583 + MIT1002_03895 0.72 +0.7
4,363,591 - MIT1002_03895 0.72 -0.6
4,363,591 - MIT1002_03895 0.72 +0.2
4,363,591 - MIT1002_03895 0.72 -0.8
4,363,601 - MIT1002_03895 0.73 +0.5
4,363,601 - MIT1002_03895 0.73 -0.6
4,363,601 - MIT1002_03895 0.73 -0.2
4,363,626 + MIT1002_03895 0.76 +0.1
4,363,634 - MIT1002_03895 0.77 +0.0
4,363,655 - MIT1002_03895 0.79 +0.1
4,363,655 - MIT1002_03895 0.79 +2.9
4,363,685 - MIT1002_03895 0.82 +0.7
4,363,694 - MIT1002_03895 0.83 -0.9
4,363,711 + MIT1002_03895 0.84 -0.8
4,363,715 + MIT1002_03895 0.85 +0.2

Or see this region's nucleotide sequence