Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03788

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_03787 and MIT1002_03788 are separated by 17 nucleotidesMIT1002_03788 and MIT1002_03789 are separated by 78 nucleotides MIT1002_03787: MIT1002_03787 - GTP-binding protein HflX, at 4,233,585 to 4,234,874 _03787 MIT1002_03788: MIT1002_03788 - Host factor-I protein, at 4,234,892 to 4,235,140 _03788 MIT1002_03789: MIT1002_03789 - tRNA dimethylallyltransferase, at 4,235,219 to 4,236,154 _03789 Position (kb) 4234 4235 4236Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4233.902 kb on - strand, within MIT1002_03787at 4233.904 kb on - strand, within MIT1002_03787at 4234.055 kb on - strand, within MIT1002_03787at 4234.077 kb on - strand, within MIT1002_03787at 4234.077 kb on - strand, within MIT1002_03787at 4234.204 kb on + strand, within MIT1002_03787at 4234.228 kb on + strand, within MIT1002_03787at 4234.228 kb on + strand, within MIT1002_03787at 4234.228 kb on + strand, within MIT1002_03787at 4234.236 kb on - strand, within MIT1002_03787at 4234.236 kb on - strand, within MIT1002_03787at 4234.236 kb on - strand, within MIT1002_03787at 4234.273 kb on - strand, within MIT1002_03787at 4234.390 kb on + strand, within MIT1002_03787at 4234.406 kb on + strand, within MIT1002_03787at 4234.421 kb on + strand, within MIT1002_03787at 4234.424 kb on - strand, within MIT1002_03787at 4234.467 kb on - strand, within MIT1002_03787at 4234.504 kb on + strand, within MIT1002_03787at 4234.504 kb on + strand, within MIT1002_03787at 4234.512 kb on - strand, within MIT1002_03787at 4234.520 kb on + strand, within MIT1002_03787at 4234.533 kb on - strand, within MIT1002_03787at 4234.581 kb on + strand, within MIT1002_03787at 4234.610 kb on + strand, within MIT1002_03787at 4234.687 kb on + strand, within MIT1002_03787at 4234.695 kb on - strand, within MIT1002_03787at 4234.753 kb on + strandat 4234.760 kb on + strandat 4234.761 kb on - strandat 4234.799 kb on - strandat 4234.899 kb on + strandat 4234.931 kb on - strand, within MIT1002_03788at 4234.933 kb on - strand, within MIT1002_03788at 4234.973 kb on + strand, within MIT1002_03788at 4234.973 kb on + strand, within MIT1002_03788at 4234.989 kb on - strand, within MIT1002_03788at 4234.989 kb on - strand, within MIT1002_03788at 4235.055 kb on - strand, within MIT1002_03788at 4235.200 kb on - strandat 4235.280 kb on - strandat 4235.285 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
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4,233,902 - MIT1002_03787 0.25 +0.3
4,233,904 - MIT1002_03787 0.25 -0.3
4,234,055 - MIT1002_03787 0.36 -0.5
4,234,077 - MIT1002_03787 0.38 -0.9
4,234,077 - MIT1002_03787 0.38 +1.0
4,234,204 + MIT1002_03787 0.48 -3.2
4,234,228 + MIT1002_03787 0.50 -1.5
4,234,228 + MIT1002_03787 0.50 +0.1
4,234,228 + MIT1002_03787 0.50 -0.9
4,234,236 - MIT1002_03787 0.50 -0.3
4,234,236 - MIT1002_03787 0.50 -0.5
4,234,236 - MIT1002_03787 0.50 +0.4
4,234,273 - MIT1002_03787 0.53 +1.1
4,234,390 + MIT1002_03787 0.62 -0.7
4,234,406 + MIT1002_03787 0.64 -1.6
4,234,421 + MIT1002_03787 0.65 +0.5
4,234,424 - MIT1002_03787 0.65 -0.2
4,234,467 - MIT1002_03787 0.68 -1.2
4,234,504 + MIT1002_03787 0.71 -0.7
4,234,504 + MIT1002_03787 0.71 -0.6
4,234,512 - MIT1002_03787 0.72 +0.1
4,234,520 + MIT1002_03787 0.72 -0.8
4,234,533 - MIT1002_03787 0.73 +0.3
4,234,581 + MIT1002_03787 0.77 -2.4
4,234,610 + MIT1002_03787 0.79 +0.1
4,234,687 + MIT1002_03787 0.85 +0.1
4,234,695 - MIT1002_03787 0.86 +0.0
4,234,753 + -0.1
4,234,760 + -2.1
4,234,761 - +0.1
4,234,799 - +0.1
4,234,899 + +2.0
4,234,931 - MIT1002_03788 0.16 +4.1
4,234,933 - MIT1002_03788 0.16 +4.4
4,234,973 + MIT1002_03788 0.33 +2.6
4,234,973 + MIT1002_03788 0.33 +2.2
4,234,989 - MIT1002_03788 0.39 +4.3
4,234,989 - MIT1002_03788 0.39 +4.2
4,235,055 - MIT1002_03788 0.65 +4.2
4,235,200 - +1.6
4,235,280 - -0.9
4,235,285 - -1.3

Or see this region's nucleotide sequence