Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03757 and MIT1002_03758 are separated by 100 nucleotides MIT1002_03758 and MIT1002_03759 are separated by 161 nucleotides MIT1002_03759 and MIT1002_03760 are separated by 148 nucleotides
MIT1002_03757: MIT1002_03757 - hypothetical protein, at 4,199,742 to 4,199,969
_03757
MIT1002_03758: MIT1002_03758 - GTP cyclohydrolase 1, at 4,200,070 to 4,200,753
_03758
MIT1002_03759: MIT1002_03759 - Dihydrofolate reductase FolM, at 4,200,915 to 4,201,622
_03759
MIT1002_03760: MIT1002_03760 - Putative agmatine deiminase, at 4,201,771 to 4,202,835
_03760
Position (kb) 4200
4201
4202 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4199.947 kb on + strand at 4199.955 kb on - strand at 4200.874 kb on + strand at 4200.925 kb on - strand at 4200.969 kb on - strand at 4201.054 kb on - strand, within MIT1002_03759 at 4201.123 kb on - strand, within MIT1002_03759 at 4201.135 kb on - strand, within MIT1002_03759 at 4201.146 kb on + strand, within MIT1002_03759 at 4201.146 kb on - strand, within MIT1002_03759 at 4201.226 kb on - strand, within MIT1002_03759 at 4201.262 kb on + strand, within MIT1002_03759 at 4201.344 kb on + strand, within MIT1002_03759 at 4201.371 kb on + strand, within MIT1002_03759 at 4201.374 kb on - strand, within MIT1002_03759 at 4201.438 kb on + strand, within MIT1002_03759 at 4201.465 kb on - strand, within MIT1002_03759 at 4201.545 kb on + strand, within MIT1002_03759 at 4201.579 kb on - strand at 4201.589 kb on - strand at 4201.589 kb on - strand at 4201.589 kb on - strand at 4201.595 kb on + strand at 4201.596 kb on - strand at 4201.603 kb on - strand at 4201.618 kb on + strand at 4201.618 kb on + strand at 4201.712 kb on - strand at 4201.718 kb on - strand at 4201.779 kb on - strand at 4201.855 kb on + strand at 4201.855 kb on + strand at 4201.884 kb on - strand, within MIT1002_03760 at 4201.886 kb on + strand, within MIT1002_03760 at 4201.886 kb on + strand, within MIT1002_03760 at 4201.932 kb on - strand, within MIT1002_03760 at 4201.955 kb on - strand, within MIT1002_03760 at 4202.041 kb on + strand, within MIT1002_03760 at 4202.123 kb on - strand, within MIT1002_03760 at 4202.174 kb on - strand, within MIT1002_03760 at 4202.174 kb on - strand, within MIT1002_03760 at 4202.174 kb on - strand, within MIT1002_03760 at 4202.241 kb on + strand, within MIT1002_03760 at 4202.246 kb on + strand, within MIT1002_03760 at 4202.246 kb on - strand, within MIT1002_03760 at 4202.264 kb on - strand, within MIT1002_03760 at 4202.264 kb on - strand, within MIT1002_03760 at 4202.270 kb on - strand, within MIT1002_03760 at 4202.281 kb on + strand, within MIT1002_03760 at 4202.289 kb on + strand, within MIT1002_03760 at 4202.290 kb on - strand, within MIT1002_03760 at 4202.399 kb on + strand, within MIT1002_03760 at 4202.426 kb on - strand, within MIT1002_03760 at 4202.451 kb on - strand, within MIT1002_03760 at 4202.451 kb on - strand, within MIT1002_03760 at 4202.504 kb on + strand, within MIT1002_03760 at 4202.504 kb on + strand, within MIT1002_03760 at 4202.504 kb on + strand, within MIT1002_03760 at 4202.504 kb on + strand, within MIT1002_03760 at 4202.512 kb on - strand, within MIT1002_03760 at 4202.512 kb on - strand, within MIT1002_03760 at 4202.512 kb on - strand, within MIT1002_03760 at 4202.512 kb on - strand, within MIT1002_03760 at 4202.512 kb on - strand, within MIT1002_03760 at 4202.512 kb on - strand, within MIT1002_03760 at 4202.552 kb on - strand, within MIT1002_03760
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5 remove 4,199,947 + +0.0 4,199,955 - -0.5 4,200,874 + +0.2 4,200,925 - -1.3 4,200,969 - +0.0 4,201,054 - MIT1002_03759 0.20 +0.9 4,201,123 - MIT1002_03759 0.29 -1.5 4,201,135 - MIT1002_03759 0.31 -0.8 4,201,146 + MIT1002_03759 0.33 +0.1 4,201,146 - MIT1002_03759 0.33 -0.2 4,201,226 - MIT1002_03759 0.44 -0.5 4,201,262 + MIT1002_03759 0.49 +0.5 4,201,344 + MIT1002_03759 0.61 +0.7 4,201,371 + MIT1002_03759 0.64 -0.4 4,201,374 - MIT1002_03759 0.65 -0.1 4,201,438 + MIT1002_03759 0.74 +0.4 4,201,465 - MIT1002_03759 0.78 +1.3 4,201,545 + MIT1002_03759 0.89 +1.5 4,201,579 - +0.0 4,201,589 - -0.1 4,201,589 - -0.3 4,201,589 - +1.1 4,201,595 + -0.4 4,201,596 - -1.7 4,201,603 - -0.9 4,201,618 + +0.5 4,201,618 + -0.8 4,201,712 - -0.7 4,201,718 - -1.5 4,201,779 - -1.1 4,201,855 + -0.5 4,201,855 + -1.4 4,201,884 - MIT1002_03760 0.11 -1.8 4,201,886 + MIT1002_03760 0.11 -0.2 4,201,886 + MIT1002_03760 0.11 -1.1 4,201,932 - MIT1002_03760 0.15 -1.0 4,201,955 - MIT1002_03760 0.17 -2.5 4,202,041 + MIT1002_03760 0.25 -1.6 4,202,123 - MIT1002_03760 0.33 -4.2 4,202,174 - MIT1002_03760 0.38 -2.3 4,202,174 - MIT1002_03760 0.38 +1.3 4,202,174 - MIT1002_03760 0.38 -0.7 4,202,241 + MIT1002_03760 0.44 -2.0 4,202,246 + MIT1002_03760 0.45 +0.6 4,202,246 - MIT1002_03760 0.45 +1.0 4,202,264 - MIT1002_03760 0.46 -3.7 4,202,264 - MIT1002_03760 0.46 +0.0 4,202,270 - MIT1002_03760 0.47 -2.7 4,202,281 + MIT1002_03760 0.48 -0.4 4,202,289 + MIT1002_03760 0.49 -0.7 4,202,290 - MIT1002_03760 0.49 -0.7 4,202,399 + MIT1002_03760 0.59 -0.8 4,202,426 - MIT1002_03760 0.62 -1.0 4,202,451 - MIT1002_03760 0.64 -0.5 4,202,451 - MIT1002_03760 0.64 -1.6 4,202,504 + MIT1002_03760 0.69 -2.1 4,202,504 + MIT1002_03760 0.69 -1.3 4,202,504 + MIT1002_03760 0.69 +0.3 4,202,504 + MIT1002_03760 0.69 -2.0 4,202,512 - MIT1002_03760 0.70 +1.8 4,202,512 - MIT1002_03760 0.70 -1.1 4,202,512 - MIT1002_03760 0.70 -0.4 4,202,512 - MIT1002_03760 0.70 -0.2 4,202,512 - MIT1002_03760 0.70 +0.0 4,202,512 - MIT1002_03760 0.70 -2.1 4,202,552 - MIT1002_03760 0.73 -2.7
Or see this region's nucleotide sequence