Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03671

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
4,103,263	+		MIT1002_03670	0.20	-3.0
4,103,293	-		MIT1002_03670	0.24	-3.2
4,103,295	+		MIT1002_03670	0.24	-2.4
4,103,349	+		MIT1002_03670	0.30	-1.8
4,103,465	+		MIT1002_03670	0.43	+0.4
4,103,472	+		MIT1002_03670	0.44	-1.6
4,103,607	+		MIT1002_03670	0.59	-0.6
4,103,616	+		MIT1002_03670	0.60	-3.9
4,103,650	-		MIT1002_03670	0.64	+1.2
4,103,735	-		MIT1002_03670	0.73	-2.8
4,103,752	+		MIT1002_03670	0.75	-3.0
4,103,849	+		MIT1002_03670	0.86	-3.1
4,103,857	-		MIT1002_03670	0.87	-2.2
4,103,857	-		MIT1002_03670	0.87	-2.0
4,103,868	-		MIT1002_03670	0.88	+0.6
4,103,883	+				-0.4
4,103,906	+				-3.4
4,103,914	-				-2.3
4,103,914	-				-1.2
4,103,914	-				-3.7
4,103,929	-				-1.3
4,103,929	-				-1.6
4,103,959	+				-0.6
4,104,057	-				+1.4
4,104,060	+				-2.5
4,104,119	-				-0.2
4,104,128	+				+1.8
4,104,128	+				-0.2
4,104,130	+				-0.2
4,104,147	+				-0.7
4,104,151	+				-1.2
4,104,161	+				-0.1
4,104,161	+				-2.5
4,104,200	+				-1.0
4,104,252	-				-0.1
4,104,321	+		MIT1002_03671	0.14	-0.5
4,104,329	-		MIT1002_03671	0.15	-0.8
4,104,432	+		MIT1002_03671	0.27	-2.0
4,104,499	+		MIT1002_03671	0.34	-0.1
4,104,571	+		MIT1002_03671	0.42	-2.0
4,104,602	-		MIT1002_03671	0.46	+0.2
4,104,608	+		MIT1002_03671	0.46	+0.9
4,104,608	+		MIT1002_03671	0.46	+1.9
4,104,608	+		MIT1002_03671	0.46	+0.7
4,104,608	+		MIT1002_03671	0.46	+1.7
4,104,608	+		MIT1002_03671	0.46	-1.5
4,104,616	-		MIT1002_03671	0.47	+0.4
4,104,616	-		MIT1002_03671	0.47	+1.0
4,104,616	-		MIT1002_03671	0.47	+1.3
4,104,642	+		MIT1002_03671	0.50	-1.9
4,104,650	-		MIT1002_03671	0.51	-0.9
4,104,663	+		MIT1002_03671	0.53	-1.2
4,104,671	-		MIT1002_03671	0.54	+0.4
4,104,681	+		MIT1002_03671	0.55	+1.0
4,104,718	+		MIT1002_03671	0.59	+1.8
4,104,723	+		MIT1002_03671	0.59	+2.4
4,104,748	-		MIT1002_03671	0.62	+2.0
4,104,750	+		MIT1002_03671	0.62	+0.7
4,104,750	+		MIT1002_03671	0.62	-0.3
4,104,750	+		MIT1002_03671	0.62	+0.5
4,104,750	+		MIT1002_03671	0.62	-0.5
4,104,758	-		MIT1002_03671	0.63	-0.1
4,104,758	-		MIT1002_03671	0.63	-2.1
4,104,758	-		MIT1002_03671	0.63	+0.5
4,104,758	-		MIT1002_03671	0.63	-1.7
4,104,758	-		MIT1002_03671	0.63	+0.0
4,104,758	-		MIT1002_03671	0.63	+0.4
4,104,758	-		MIT1002_03671	0.63	+0.6
4,104,758	-		MIT1002_03671	0.63	+0.3
4,104,808	+		MIT1002_03671	0.69	+0.4
4,104,846	-		MIT1002_03671	0.73	+2.9
4,104,887	-		MIT1002_03671	0.78	+0.3
4,104,944	+		MIT1002_03671	0.84	+1.9
4,104,968	+		MIT1002_03671	0.87	-1.2
4,105,070	+				-0.7
4,105,093	-				+0.2
4,105,196	+				-0.8
4,105,231	-		MIT1002_03672	0.13	-2.1
4,105,233	+		MIT1002_03672	0.13	+0.3
4,105,235	+		MIT1002_03672	0.13	-1.0
4,105,236	-		MIT1002_03672	0.13	-0.0
4,105,241	-		MIT1002_03672	0.14	-1.0
4,105,294	+		MIT1002_03672	0.23	+0.4
4,105,302	-		MIT1002_03672	0.24	-1.2
4,105,307	-		MIT1002_03672	0.25	-0.4
4,105,373	+		MIT1002_03672	0.35	-1.2
4,105,373	+		MIT1002_03672	0.35	-0.4
4,105,457	-		MIT1002_03672	0.48	-1.5
4,105,484	-		MIT1002_03672	0.52	+0.2
4,105,484	-		MIT1002_03672	0.52	+1.7
4,105,484	-		MIT1002_03672	0.52	+2.0
4,105,492	-		MIT1002_03672	0.54	+0.2
4,105,503	-		MIT1002_03672	0.55	-0.7
4,105,503	-		MIT1002_03672	0.55	-0.6
4,105,503	-		MIT1002_03672	0.55	-2.6
4,105,534	+		MIT1002_03672	0.60	+0.3
4,105,632	+		MIT1002_03672	0.75	+1.9
4,105,700	+		MIT1002_03672	0.86	-0.1
4,105,731	-				+0.5
4,105,757	-				-0.5
4,105,798	-				+0.2
4,105,801	+				-3.2
4,105,892	+		MIT1002_03673	0.44	+0.5
4,105,900	-		MIT1002_03673	0.47	-0.3
4,105,902	-		MIT1002_03673	0.48	-0.3
4,105,937	+		MIT1002_03673	0.63	-0.0
4,105,939	+		MIT1002_03673	0.63	+0.4
4,105,959	+		MIT1002_03673	0.72	+0.7
4,105,959	+		MIT1002_03673	0.72	-3.2