Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03478

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
3,885,149	-		MIT1002_03476	0.47	-0.1
3,885,149	-		MIT1002_03476	0.47	-0.2
3,885,266	-		MIT1002_03476	0.60	-2.5
3,885,346	+		MIT1002_03476	0.69	-1.0
3,885,354	-		MIT1002_03476	0.70	+0.2
3,885,354	-		MIT1002_03476	0.70	-0.2
3,885,363	-		MIT1002_03476	0.71	-0.6
3,885,367	+		MIT1002_03476	0.72	+0.1
3,885,408	+		MIT1002_03476	0.76	+0.2
3,885,458	+		MIT1002_03476	0.82	-1.4
3,885,465	+		MIT1002_03476	0.83	-0.3
3,885,470	+		MIT1002_03476	0.83	+1.6
3,885,521	+		MIT1002_03476	0.89	+0.5
3,885,654	+				+1.9
3,885,654	+				+0.2
3,885,654	+				-0.5
3,885,734	+		MIT1002_03477	0.21	-2.6
3,885,742	-		MIT1002_03477	0.24	-2.2
3,885,770	+		MIT1002_03477	0.36	+1.2
3,885,787	-		MIT1002_03477	0.43	+0.8
3,885,963	+				-0.4
3,885,971	-				+0.1
3,886,000	-				-0.6
3,886,031	-				-0.0
3,886,052	-				+0.2
3,886,066	+				-0.4
3,886,109	-				-2.1
3,886,208	-				+0.1
3,886,220	+				+0.4
3,886,220	+				-0.6
3,886,245	+				+1.2
3,886,245	+				-0.1
3,886,340	+		MIT1002_03478	0.18	-0.3
3,886,367	-		MIT1002_03478	0.21	-0.1
3,886,367	-		MIT1002_03478	0.21	+0.8
3,886,369	+		MIT1002_03478	0.21	+1.4
3,886,377	-		MIT1002_03478	0.22	+0.2
3,886,377	-		MIT1002_03478	0.22	-0.5
3,886,377	-		MIT1002_03478	0.22	+0.5
3,886,377	-		MIT1002_03478	0.22	+0.7
3,886,448	+		MIT1002_03478	0.28	+0.2
3,886,456	+		MIT1002_03478	0.29	-3.0
3,886,456	-		MIT1002_03478	0.29	+1.8
3,886,456	-		MIT1002_03478	0.29	+2.9
3,886,464	-		MIT1002_03478	0.30	-1.9
3,886,529	+		MIT1002_03478	0.36	+0.3
3,886,529	+		MIT1002_03478	0.36	+1.1
3,886,529	+		MIT1002_03478	0.36	+0.9
3,886,537	-		MIT1002_03478	0.36	-1.9
3,886,537	-		MIT1002_03478	0.36	-2.1
3,886,537	-		MIT1002_03478	0.36	-0.3
3,886,537	-		MIT1002_03478	0.36	+0.1
3,886,554	-		MIT1002_03478	0.38	+1.8
3,886,639	-		MIT1002_03478	0.46	-1.1
3,886,709	-		MIT1002_03478	0.52	+0.5
3,886,895	+		MIT1002_03478	0.70	-0.2
3,886,895	+		MIT1002_03478	0.70	+0.2
3,886,903	-		MIT1002_03478	0.70	-0.5
3,886,903	-		MIT1002_03478	0.70	-0.4
3,886,903	-		MIT1002_03478	0.70	+0.2
3,886,983	+		MIT1002_03478	0.78	-0.6
3,886,991	-		MIT1002_03478	0.79	-0.9
3,887,017	-		MIT1002_03478	0.81	-0.1
3,887,018	-		MIT1002_03478	0.81	+2.9
3,887,018	-		MIT1002_03478	0.81	-1.1
3,887,018	-		MIT1002_03478	0.81	+1.2
3,887,018	-		MIT1002_03478	0.81	+0.5
3,887,018	-		MIT1002_03478	0.81	+2.3
3,887,027	+		MIT1002_03478	0.82	+0.4
3,887,027	+		MIT1002_03478	0.82	-0.0
3,887,027	+		MIT1002_03478	0.82	+0.1
3,887,027	+		MIT1002_03478	0.82	-0.3
3,887,035	+		MIT1002_03478	0.83	+0.3
3,887,041	+		MIT1002_03478	0.83	-1.1
3,887,150	+				+0.9
3,887,158	-				+0.6
3,887,158	-				-0.8
3,887,158	-				-0.7
3,887,234	-				-1.6
3,887,352	+				+0.4
3,887,408	+				-0.6
3,887,603	-		MIT1002_03479	0.54	-1.9
3,887,710	-				+0.5
3,887,752	+		MIT1002_03480	0.13	+0.2
3,887,782	+		MIT1002_03480	0.23	+0.6
3,887,785	-		MIT1002_03480	0.24	+0.2
3,887,790	-		MIT1002_03480	0.25	+0.4
3,887,821	+		MIT1002_03480	0.36	+0.4
3,887,864	+		MIT1002_03480	0.50	-0.4
3,887,907	-		MIT1002_03480	0.64	+0.0
3,888,013	-				-0.9
3,888,046	-				+0.3
3,888,058	-				-0.6
3,888,073	+				+0.3
3,888,073	+				-1.4
3,888,081	-				-0.6
3,888,117	-				-3.1
3,888,117	-				-1.1
3,888,117	-				+0.1
3,888,117	-				+0.2
3,888,205	+		MIT1002_03481	0.37	-1.6
3,888,205	-		MIT1002_03481	0.37	-1.3
3,888,213	-		MIT1002_03481	0.40	-0.6
3,888,213	-		MIT1002_03481	0.40	-0.3
3,888,213	-		MIT1002_03481	0.40	-2.3