Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03458

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
3,865,394	-		MIT1002_03457	0.19	+1.2
3,865,394	-		MIT1002_03457	0.19	+0.7
3,865,493	-		MIT1002_03457	0.31	+1.1
3,865,494	+		MIT1002_03457	0.31	-1.7
3,865,494	-		MIT1002_03457	0.31	+0.1
3,865,501	+		MIT1002_03457	0.32	-0.2
3,865,507	-		MIT1002_03457	0.33	-0.3
3,865,514	+		MIT1002_03457	0.33	+0.5
3,865,517	-		MIT1002_03457	0.34	+0.2
3,865,522	-		MIT1002_03457	0.34	+1.7
3,865,524	+		MIT1002_03457	0.35	+0.1
3,865,524	+		MIT1002_03457	0.35	-0.1
3,865,524	+		MIT1002_03457	0.35	+0.3
3,865,524	+		MIT1002_03457	0.35	+0.3
3,865,524	+		MIT1002_03457	0.35	-1.8
3,865,524	+		MIT1002_03457	0.35	-0.2
3,865,524	+		MIT1002_03457	0.35	+1.4
3,865,524	+		MIT1002_03457	0.35	+0.1
3,865,524	+		MIT1002_03457	0.35	-2.3
3,865,524	+		MIT1002_03457	0.35	-0.6
3,865,531	+		MIT1002_03457	0.35	+0.3
3,865,532	-		MIT1002_03457	0.36	+0.2
3,865,532	-		MIT1002_03457	0.36	+1.8
3,865,532	-		MIT1002_03457	0.36	-1.1
3,865,532	-		MIT1002_03457	0.36	-0.0
3,865,532	-		MIT1002_03457	0.36	+1.8
3,865,532	-		MIT1002_03457	0.36	-3.2
3,865,532	-		MIT1002_03457	0.36	-0.6
3,865,532	-		MIT1002_03457	0.36	+1.1
3,865,532	-		MIT1002_03457	0.36	-0.4
3,865,539	-		MIT1002_03457	0.36	+0.8
3,865,554	-		MIT1002_03457	0.38	+0.8
3,865,559	+		MIT1002_03457	0.39	-0.2
3,865,578	+		MIT1002_03457	0.41	+0.2
3,865,578	+		MIT1002_03457	0.41	+0.7
3,865,578	+		MIT1002_03457	0.41	-0.3
3,865,578	+		MIT1002_03457	0.41	+0.9
3,865,586	-		MIT1002_03457	0.42	-1.9
3,865,586	-		MIT1002_03457	0.42	+0.4
3,865,586	-		MIT1002_03457	0.42	-1.7
3,865,586	-		MIT1002_03457	0.42	-0.1
3,865,624	+		MIT1002_03457	0.47	-2.6
3,865,626	+		MIT1002_03457	0.47	-1.0
3,865,647	-		MIT1002_03457	0.49	+0.3
3,865,666	+		MIT1002_03457	0.52	-0.0
3,865,671	+		MIT1002_03457	0.52	-0.4
3,865,676	+		MIT1002_03457	0.53	+0.2
3,865,686	+		MIT1002_03457	0.54	+0.6
3,865,780	+		MIT1002_03457	0.65	-0.7
3,865,780	+		MIT1002_03457	0.65	-1.3
3,865,788	-		MIT1002_03457	0.66	-1.7
3,865,788	-		MIT1002_03457	0.66	-1.4
3,865,827	+		MIT1002_03457	0.71	-0.8
3,865,835	-		MIT1002_03457	0.72	+0.2
3,865,997	-				-1.6
3,866,071	+				-0.2
3,866,081	+				-0.6
3,866,105	+				+0.0
3,866,113	-				-0.3
3,866,146	+				+0.1
3,866,196	+				-1.1
3,866,196	+				-0.5
3,866,196	+				-2.0
3,866,204	-				+0.5
3,866,204	-				-0.8
3,866,248	+				-2.4
3,866,328	-		MIT1002_03458	0.20	+0.3
3,866,390	-		MIT1002_03458	0.35	+0.0
3,866,440	+		MIT1002_03458	0.47	-1.0
3,866,448	+		MIT1002_03458	0.49	-0.0
3,866,499	-		MIT1002_03458	0.62	-3.0
3,866,518	+		MIT1002_03458	0.66	-0.3
3,866,571	-		MIT1002_03458	0.79	+1.6
3,866,571	-		MIT1002_03458	0.79	-1.2
3,866,596	+		MIT1002_03458	0.85	+0.5
3,866,611	+		MIT1002_03458	0.89	+1.0
3,866,611	+		MIT1002_03458	0.89	+1.1
3,866,611	+		MIT1002_03458	0.89	+0.5
3,866,617	-				-1.6
3,866,617	-				-0.7
3,866,617	-				+0.6
3,866,617	-				-0.6
3,866,619	-				+0.2
3,866,619	-				-0.4
3,866,632	-				-0.1
3,866,664	+				+2.2
3,866,687	-				+1.2
3,866,687	-				+1.2
3,866,708	-				-0.1
3,866,795	+				+0.1
3,866,880	-		MIT1002_03459	0.13	-0.6
3,866,889	-		MIT1002_03459	0.14	-0.5
3,866,986	-		MIT1002_03459	0.27	+0.5
3,867,148	+		MIT1002_03459	0.49	+0.7
3,867,168	-		MIT1002_03459	0.52	+1.1
3,867,288	+		MIT1002_03459	0.68	-0.2
3,867,296	-		MIT1002_03459	0.69	-2.5
3,867,369	-		MIT1002_03459	0.79	-2.1
3,867,380	+		MIT1002_03459	0.81	-0.3
3,867,380	+		MIT1002_03459	0.81	+0.8
3,867,380	+		MIT1002_03459	0.81	-0.1
3,867,432	-		MIT1002_03459	0.88	-0.3
3,867,456	-				+1.4
3,867,479	+				+0.6
3,867,571	+				-0.1
3,867,643	+				-0.8