Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03273

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
3,646,269	+		MIT1002_03272	0.43	+0.7
3,646,273	+		MIT1002_03272	0.44	+0.4
3,646,312	+		MIT1002_03272	0.46	-0.7
3,646,321	-		MIT1002_03272	0.46	-0.3
3,646,363	-		MIT1002_03272	0.49	-0.1
3,646,363	-		MIT1002_03272	0.49	+1.0
3,646,445	+		MIT1002_03272	0.54	-0.5
3,646,489	-		MIT1002_03272	0.56	+0.4
3,646,498	-		MIT1002_03272	0.57	-2.9
3,646,542	+		MIT1002_03272	0.59	+0.0
3,646,548	+		MIT1002_03272	0.60	+1.0
3,646,557	+		MIT1002_03272	0.60	-2.7
3,646,598	-		MIT1002_03272	0.63	-3.5
3,646,639	-		MIT1002_03272	0.65	-1.2
3,646,658	+		MIT1002_03272	0.66	+1.3
3,646,663	-		MIT1002_03272	0.67	+0.3
3,646,727	+		MIT1002_03272	0.70	-2.1
3,646,762	+		MIT1002_03272	0.72	-3.7
3,646,762	+		MIT1002_03272	0.72	-0.1
3,646,800	+		MIT1002_03272	0.75	-1.5
3,646,807	+		MIT1002_03272	0.75	-0.7
3,646,815	-		MIT1002_03272	0.75	-1.5
3,646,867	-		MIT1002_03272	0.79	-1.3
3,646,880	+		MIT1002_03272	0.79	-1.6
3,646,902	+		MIT1002_03272	0.81	-1.5
3,646,902	+		MIT1002_03272	0.81	+1.1
3,646,902	+		MIT1002_03272	0.81	+3.1
3,646,903	-		MIT1002_03272	0.81	-0.8
3,646,910	-		MIT1002_03272	0.81	-1.8
3,646,999	+		MIT1002_03272	0.86	+0.3
3,647,091	-				+0.0
3,647,107	+				-0.1
3,647,115	-				-1.3
3,647,174	-				-1.1
3,647,220	-				-3.2
3,647,296	-				-3.2
3,647,457	+		MIT1002_03273	0.16	+0.1
3,647,483	-		MIT1002_03273	0.19	+0.1
3,647,490	+		MIT1002_03273	0.19	-1.1
3,647,498	-		MIT1002_03273	0.20	-2.3
3,647,498	-		MIT1002_03273	0.20	-1.6
3,647,498	-		MIT1002_03273	0.20	-1.4
3,647,498	-		MIT1002_03273	0.20	-0.1
3,647,529	-		MIT1002_03273	0.22	-1.3
3,647,687	+		MIT1002_03273	0.35	+0.5
3,647,749	-		MIT1002_03273	0.41	-0.9
3,647,749	-		MIT1002_03273	0.41	+0.3
3,647,749	-		MIT1002_03273	0.41	+0.9
3,647,863	-		MIT1002_03273	0.50	-0.9
3,647,897	+		MIT1002_03273	0.53	-0.3
3,647,968	+		MIT1002_03273	0.59	-1.0
3,647,975	+		MIT1002_03273	0.59	+0.9
3,647,975	+		MIT1002_03273	0.59	+0.6
3,647,975	+		MIT1002_03273	0.59	-0.7
3,647,976	-		MIT1002_03273	0.59	+0.2
3,647,983	-		MIT1002_03273	0.60	+0.4
3,648,047	-		MIT1002_03273	0.65	+0.3
3,648,103	+		MIT1002_03273	0.70	+0.2
3,648,103	+		MIT1002_03273	0.70	+1.6
3,648,134	+		MIT1002_03273	0.73	-0.0
3,648,173	+		MIT1002_03273	0.76	-1.1
3,648,181	-		MIT1002_03273	0.76	-0.4
3,648,214	+		MIT1002_03273	0.79	-1.6
3,648,267	+		MIT1002_03273	0.84	+0.1
3,648,302	+		MIT1002_03273	0.86	+0.9
3,648,302	+		MIT1002_03273	0.86	-1.7
3,648,302	+		MIT1002_03273	0.86	-0.1
3,648,310	-		MIT1002_03273	0.87	-1.6
3,648,345	-				+0.1
3,648,345	-				-0.7
3,648,380	+				-1.8
3,648,380	+				-0.9
3,648,380	+				-1.6
3,648,380	+				-1.1
3,648,388	-				+0.2
3,648,388	-				-0.6
3,648,388	-				-0.7
3,648,388	-				-0.6
3,648,388	-				+0.1
3,648,428	-				-0.4
3,648,482	-				-0.1
3,648,484	+				-0.3
3,648,493	-				-1.4
3,648,555	+				+1.3
3,648,557	+				+0.4
3,648,563	-				-0.8
3,648,565	-				-0.3
3,648,603	+				+0.4
3,648,603	-				-2.5
3,648,612	+				-0.6
3,648,620	-				+1.1
3,648,658	+				-0.6
3,648,658	+				+0.4
3,648,659	-				+0.8
3,648,666	-				-0.6
3,648,666	-				-1.6
3,648,693	-				+0.8
3,648,699	+				-0.7
3,648,763	-				-1.7
3,648,769	+				-1.0
3,648,782	+		MIT1002_03274	0.11	-1.1
3,648,818	+		MIT1002_03274	0.14	+1.4
3,648,868	-		MIT1002_03274	0.18	-0.2
3,648,869	+		MIT1002_03274	0.18	+0.6
3,648,886	+		MIT1002_03274	0.20	-1.5
3,648,891	+		MIT1002_03274	0.20	+0.9
3,648,894	-		MIT1002_03274	0.21	+1.0
3,648,978	-		MIT1002_03274	0.28	+1.1
3,648,981	+		MIT1002_03274	0.28	-0.5
3,648,981	+		MIT1002_03274	0.28	-0.2
3,649,164	+		MIT1002_03274	0.45	-3.1
3,649,215	+		MIT1002_03274	0.49	-1.6
3,649,222	-		MIT1002_03274	0.50	+0.3
3,649,222	-		MIT1002_03274	0.50	-0.5
3,649,223	-		MIT1002_03274	0.50	+0.2
3,649,316	-		MIT1002_03274	0.58	+0.0
3,649,323	+		MIT1002_03274	0.59	-1.3
3,649,386	+		MIT1002_03274	0.65	-0.1
3,649,439	-		MIT1002_03274	0.69	-0.1
3,649,463	-		MIT1002_03274	0.71	+2.4