Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03138

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_03137 and MIT1002_03138 are separated by 99 nucleotidesMIT1002_03138 and MIT1002_03139 are separated by 662 nucleotides MIT1002_03137: MIT1002_03137 - Aerobic respiration control sensor protein ArcB, at 3,493,871 to 3,496,225 _03137 MIT1002_03138: MIT1002_03138 - N-acetylmuramoyl-L-alanine amidase AmiD precursor, at 3,496,325 to 3,497,260 _03138 MIT1002_03139: MIT1002_03139 - Glutamate synthase [NADPH] large chain precursor, at 3,497,923 to 3,502,389 _03139 Position (kb) 3496 3497 3498Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3495.333 kb on - strand, within MIT1002_03137at 3495.337 kb on + strand, within MIT1002_03137at 3495.337 kb on + strand, within MIT1002_03137at 3495.345 kb on - strand, within MIT1002_03137at 3495.492 kb on - strand, within MIT1002_03137at 3495.532 kb on - strand, within MIT1002_03137at 3495.662 kb on - strand, within MIT1002_03137at 3495.775 kb on - strand, within MIT1002_03137at 3495.821 kb on - strand, within MIT1002_03137at 3495.854 kb on - strand, within MIT1002_03137at 3495.856 kb on + strand, within MIT1002_03137at 3495.864 kb on - strand, within MIT1002_03137at 3495.864 kb on - strand, within MIT1002_03137at 3495.865 kb on - strand, within MIT1002_03137at 3495.885 kb on - strand, within MIT1002_03137at 3495.930 kb on + strand, within MIT1002_03137at 3496.049 kb on + strandat 3496.057 kb on - strandat 3496.109 kb on - strandat 3496.111 kb on + strandat 3496.143 kb on + strandat 3496.150 kb on + strandat 3496.150 kb on + strandat 3496.158 kb on - strandat 3496.158 kb on - strandat 3496.255 kb on + strandat 3496.267 kb on - strandat 3496.299 kb on + strandat 3496.315 kb on - strandat 3496.315 kb on - strandat 3496.330 kb on - strandat 3496.371 kb on + strandat 3496.390 kb on - strandat 3496.390 kb on - strandat 3496.410 kb on - strandat 3496.414 kb on + strandat 3496.460 kb on + strand, within MIT1002_03138at 3496.460 kb on + strand, within MIT1002_03138at 3496.468 kb on - strand, within MIT1002_03138at 3496.510 kb on + strand, within MIT1002_03138at 3496.603 kb on + strand, within MIT1002_03138at 3496.722 kb on + strand, within MIT1002_03138at 3496.749 kb on + strand, within MIT1002_03138at 3496.749 kb on + strand, within MIT1002_03138at 3496.757 kb on - strand, within MIT1002_03138at 3496.757 kb on - strand, within MIT1002_03138at 3496.757 kb on - strand, within MIT1002_03138at 3496.757 kb on - strand, within MIT1002_03138at 3496.796 kb on - strand, within MIT1002_03138at 3496.814 kb on - strand, within MIT1002_03138at 3496.826 kb on + strand, within MIT1002_03138at 3496.826 kb on - strand, within MIT1002_03138at 3496.893 kb on + strand, within MIT1002_03138at 3496.893 kb on + strand, within MIT1002_03138at 3496.901 kb on - strand, within MIT1002_03138at 3496.901 kb on - strand, within MIT1002_03138at 3496.907 kb on - strand, within MIT1002_03138at 3496.907 kb on - strand, within MIT1002_03138at 3496.907 kb on - strand, within MIT1002_03138at 3496.940 kb on + strand, within MIT1002_03138at 3496.940 kb on + strand, within MIT1002_03138at 3496.945 kb on + strand, within MIT1002_03138at 3496.953 kb on - strand, within MIT1002_03138at 3497.012 kb on + strand, within MIT1002_03138at 3497.033 kb on - strand, within MIT1002_03138at 3497.075 kb on + strand, within MIT1002_03138at 3497.083 kb on - strand, within MIT1002_03138at 3497.102 kb on - strand, within MIT1002_03138at 3497.158 kb on + strand, within MIT1002_03138at 3497.173 kb on + strandat 3497.270 kb on - strandat 3497.272 kb on - strandat 3497.283 kb on - strandat 3497.335 kb on - strandat 3497.386 kb on - strandat 3497.391 kb on - strandat 3497.476 kb on - strandat 3497.672 kb on + strandat 3497.672 kb on + strandat 3497.673 kb on + strandat 3497.673 kb on + strandat 3497.680 kb on - strandat 3497.680 kb on - strandat 3497.680 kb on - strandat 3497.680 kb on - strandat 3497.680 kb on - strandat 3497.681 kb on - strandat 3497.681 kb on - strandat 3497.681 kb on - strandat 3497.681 kb on - strandat 3497.731 kb on + strandat 3497.808 kb on + strandat 3497.868 kb on - strandat 3497.882 kb on + strandat 3497.882 kb on + strandat 3497.883 kb on + strandat 3497.896 kb on - strandat 3497.962 kb on + strandat 3498.022 kb on - strandat 3498.191 kb on + strandat 3498.204 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
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3,495,333 - MIT1002_03137 0.62 -0.1
3,495,337 + MIT1002_03137 0.62 -0.4
3,495,337 + MIT1002_03137 0.62 -0.9
3,495,345 - MIT1002_03137 0.63 -0.7
3,495,492 - MIT1002_03137 0.69 -1.4
3,495,532 - MIT1002_03137 0.71 -0.5
3,495,662 - MIT1002_03137 0.76 -2.8
3,495,775 - MIT1002_03137 0.81 -1.1
3,495,821 - MIT1002_03137 0.83 -2.0
3,495,854 - MIT1002_03137 0.84 -1.1
3,495,856 + MIT1002_03137 0.84 -1.9
3,495,864 - MIT1002_03137 0.85 -2.3
3,495,864 - MIT1002_03137 0.85 -1.2
3,495,865 - MIT1002_03137 0.85 -0.4
3,495,885 - MIT1002_03137 0.86 +0.1
3,495,930 + MIT1002_03137 0.87 +0.1
3,496,049 + +0.1
3,496,057 - -2.5
3,496,109 - -2.1
3,496,111 + -1.5
3,496,143 + -0.5
3,496,150 + +0.1
3,496,150 + -0.7
3,496,158 - -0.5
3,496,158 - -0.4
3,496,255 + +1.4
3,496,267 - +0.6
3,496,299 + +0.8
3,496,315 - -2.5
3,496,315 - -0.1
3,496,330 - +0.3
3,496,371 + +1.9
3,496,390 - +1.1
3,496,390 - +0.9
3,496,410 - +1.1
3,496,414 + +0.9
3,496,460 + MIT1002_03138 0.14 +0.4
3,496,460 + MIT1002_03138 0.14 +0.1
3,496,468 - MIT1002_03138 0.15 -1.8
3,496,510 + MIT1002_03138 0.20 +1.7
3,496,603 + MIT1002_03138 0.30 -0.1
3,496,722 + MIT1002_03138 0.42 +2.1
3,496,749 + MIT1002_03138 0.45 +0.9
3,496,749 + MIT1002_03138 0.45 -0.3
3,496,757 - MIT1002_03138 0.46 -1.5
3,496,757 - MIT1002_03138 0.46 +1.1
3,496,757 - MIT1002_03138 0.46 +0.3
3,496,757 - MIT1002_03138 0.46 -0.0
3,496,796 - MIT1002_03138 0.50 +2.1
3,496,814 - MIT1002_03138 0.52 +0.4
3,496,826 + MIT1002_03138 0.54 -0.7
3,496,826 - MIT1002_03138 0.54 -1.0
3,496,893 + MIT1002_03138 0.61 +1.7
3,496,893 + MIT1002_03138 0.61 +0.2
3,496,901 - MIT1002_03138 0.62 +2.5
3,496,901 - MIT1002_03138 0.62 +1.3
3,496,907 - MIT1002_03138 0.62 +0.8
3,496,907 - MIT1002_03138 0.62 -3.4
3,496,907 - MIT1002_03138 0.62 -0.1
3,496,940 + MIT1002_03138 0.66 -1.2
3,496,940 + MIT1002_03138 0.66 +0.9
3,496,945 + MIT1002_03138 0.66 -0.1
3,496,953 - MIT1002_03138 0.67 +0.4
3,497,012 + MIT1002_03138 0.73 +0.7
3,497,033 - MIT1002_03138 0.76 +1.1
3,497,075 + MIT1002_03138 0.80 -0.5
3,497,083 - MIT1002_03138 0.81 +0.9
3,497,102 - MIT1002_03138 0.83 +1.3
3,497,158 + MIT1002_03138 0.89 -0.1
3,497,173 + +2.0
3,497,270 - +0.5
3,497,272 - -0.5
3,497,283 - -0.8
3,497,335 - -0.4
3,497,386 - -0.9
3,497,391 - +1.2
3,497,476 - -1.0
3,497,672 + -1.0
3,497,672 + -1.6
3,497,673 + -0.3
3,497,673 + +0.2
3,497,680 - -1.4
3,497,680 - -0.4
3,497,680 - -0.0
3,497,680 - +0.4
3,497,680 - -1.7
3,497,681 - -0.9
3,497,681 - -1.8
3,497,681 - -0.7
3,497,681 - -0.0
3,497,731 + +0.7
3,497,808 + -2.0
3,497,868 - -4.1
3,497,882 + -3.3
3,497,882 + -1.7
3,497,883 + -5.0
3,497,896 - -1.6
3,497,962 + -4.4
3,498,022 - -0.4
3,498,191 + -0.1
3,498,204 + -2.9

Or see this region's nucleotide sequence