Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02555

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
2,847,576	+		MIT1002_02553	0.68	+0.3
2,847,576	-		MIT1002_02553	0.68	-1.2
2,847,583	+		MIT1002_02553	0.68	+1.2
2,847,583	+		MIT1002_02553	0.68	-0.5
2,847,591	-		MIT1002_02553	0.69	-1.1
2,847,591	-		MIT1002_02553	0.69	-0.7
2,847,627	-		MIT1002_02553	0.73	+0.2
2,847,627	-		MIT1002_02553	0.73	-1.1
2,847,681	-		MIT1002_02553	0.79	-0.3
2,847,699	+		MIT1002_02553	0.81	+0.5
2,847,701	+		MIT1002_02553	0.81	-0.4
2,847,756	+		MIT1002_02553	0.87	-0.1
2,847,830	-				+0.2
2,847,971	-				-0.6
2,848,000	+				+1.7
2,848,008	-				-1.2
2,848,008	-				-0.3
2,848,073	+		MIT1002_02554	0.12	-1.3
2,848,083	+		MIT1002_02554	0.14	-1.0
2,848,091	-		MIT1002_02554	0.15	-1.3
2,848,091	-		MIT1002_02554	0.15	-0.2
2,848,107	+		MIT1002_02554	0.18	-0.6
2,848,160	+		MIT1002_02554	0.29	-0.2
2,848,172	-		MIT1002_02554	0.31	-0.2
2,848,237	+		MIT1002_02554	0.43	+0.5
2,848,245	-		MIT1002_02554	0.45	+0.3
2,848,259	-		MIT1002_02554	0.47	-1.5
2,848,317	-		MIT1002_02554	0.58	+1.0
2,848,324	+		MIT1002_02554	0.60	-0.2
2,848,324	-		MIT1002_02554	0.60	+1.0
2,848,332	-		MIT1002_02554	0.61	+0.2
2,848,334	-		MIT1002_02554	0.62	-0.7
2,848,396	-		MIT1002_02554	0.74	-1.3
2,848,398	-		MIT1002_02554	0.74	-0.4
2,848,411	+		MIT1002_02554	0.76	-1.1
2,848,416	+		MIT1002_02554	0.77	+1.2
2,848,416	+		MIT1002_02554	0.77	+0.4
2,848,433	+		MIT1002_02554	0.81	+0.5
2,848,433	-		MIT1002_02554	0.81	-0.1
2,848,446	+		MIT1002_02554	0.83	-1.7
2,848,482	+				-1.4
2,848,487	-				+0.2
2,848,497	+				+0.4
2,848,497	+				-0.3
2,848,521	-				-0.2
2,848,542	-				+0.1
2,848,542	-				+0.5
2,848,576	-				+0.1
2,848,578	+				-0.5
2,848,579	+				-0.4
2,848,646	+		MIT1002_02555	0.14	-0.7
2,848,654	-		MIT1002_02555	0.16	-2.7
2,848,654	-		MIT1002_02555	0.16	-0.1
2,848,654	-		MIT1002_02555	0.16	+0.3
2,848,723	+		MIT1002_02555	0.28	-1.4
2,848,838	+		MIT1002_02555	0.48	-0.6
2,848,846	-		MIT1002_02555	0.50	+0.6
2,848,864	-		MIT1002_02555	0.53	-0.4
2,848,866	+		MIT1002_02555	0.53	-2.2
2,848,874	-		MIT1002_02555	0.55	-2.2
2,848,941	+		MIT1002_02555	0.67	+1.0
2,849,013	+		MIT1002_02555	0.80	+0.9
2,849,187	+				-0.4
2,849,187	+				-0.4
2,849,219	+				-1.7
2,849,227	-				+1.0
2,849,263	-				+2.5
2,849,290	-				+0.7
2,849,429	+		MIT1002_02556	0.17	+0.5
2,849,429	+		MIT1002_02556	0.17	-0.7
2,849,429	+		MIT1002_02556	0.17	-0.2
2,849,429	+		MIT1002_02556	0.17	-1.6
2,849,449	-		MIT1002_02556	0.18	-0.3
2,849,555	+		MIT1002_02556	0.26	+0.3
2,849,563	-		MIT1002_02556	0.27	-0.5
2,849,627	+		MIT1002_02556	0.32	+2.4
2,849,637	+		MIT1002_02556	0.33	+0.7
2,849,641	+		MIT1002_02556	0.33	+0.6
2,849,649	-		MIT1002_02556	0.34	+1.2
2,849,651	+		MIT1002_02556	0.34	+0.3
2,849,651	+		MIT1002_02556	0.34	+0.9
2,849,659	-		MIT1002_02556	0.34	-0.6
2,849,659	-		MIT1002_02556	0.34	+0.0
2,849,659	-		MIT1002_02556	0.34	-0.0
2,849,659	-		MIT1002_02556	0.34	-2.1
2,849,665	+		MIT1002_02556	0.35	+0.3
2,849,666	-		MIT1002_02556	0.35	+0.9
2,849,673	-		MIT1002_02556	0.35	-0.8
2,849,683	-		MIT1002_02556	0.36	+0.0
2,849,730	-		MIT1002_02556	0.40	-0.3
2,849,740	+		MIT1002_02556	0.41	-1.5
2,849,777	+		MIT1002_02556	0.43	+0.3
2,849,777	+		MIT1002_02556	0.43	-3.1
2,849,785	-		MIT1002_02556	0.44	-1.0
2,849,785	-		MIT1002_02556	0.44	-0.5
2,849,856	+		MIT1002_02556	0.49	+0.3
2,849,856	+		MIT1002_02556	0.49	-1.4
2,849,864	-		MIT1002_02556	0.50	+0.5
2,850,038	+		MIT1002_02556	0.63	-0.4
2,850,039	+		MIT1002_02556	0.63	+0.0
2,850,054	-		MIT1002_02556	0.65	-0.4
2,850,056	+		MIT1002_02556	0.65	-0.0