Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02478

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
2,766,286	-		MIT1002_02476	0.53	-0.3
2,766,301	+		MIT1002_02476	0.56	-0.3
2,766,301	+		MIT1002_02476	0.56	-0.3
2,766,301	+		MIT1002_02476	0.56	-0.5
2,766,345	+		MIT1002_02476	0.66	+0.3
2,766,355	+		MIT1002_02476	0.68	+0.2
2,766,414	-		MIT1002_02476	0.81	+1.8
2,766,419	+		MIT1002_02476	0.82	-0.7
2,766,428	-		MIT1002_02476	0.84	-0.8
2,766,434	+		MIT1002_02476	0.85	-0.2
2,766,439	+		MIT1002_02476	0.86	+1.1
2,766,453	+		MIT1002_02476	0.89	-0.9
2,766,458	+				+0.6
2,766,458	-				+0.1
2,766,462	+				+0.4
2,766,488	+				-2.5
2,766,488	+				-0.6
2,766,549	+				+0.0
2,766,554	+				-0.4
2,766,577	-				-0.2
2,766,598	+		MIT1002_02477	0.11	-0.7
2,766,600	+		MIT1002_02477	0.11	+2.3
2,766,608	+		MIT1002_02477	0.12	+0.1
2,766,616	-		MIT1002_02477	0.13	-1.5
2,766,665	+		MIT1002_02477	0.20	-0.2
2,766,673	-		MIT1002_02477	0.21	+1.6
2,766,673	-		MIT1002_02477	0.21	-1.5
2,766,784	-		MIT1002_02477	0.36	-1.6
2,766,795	+		MIT1002_02477	0.37	+0.1
2,766,795	+		MIT1002_02477	0.37	-1.0
2,766,795	+		MIT1002_02477	0.37	+0.1
2,766,795	+		MIT1002_02477	0.37	-0.9
2,766,801	-		MIT1002_02477	0.38	+0.3
2,766,801	-		MIT1002_02477	0.38	+0.1
2,766,803	-		MIT1002_02477	0.38	-1.0
2,766,803	-		MIT1002_02477	0.38	-1.0
2,766,803	-		MIT1002_02477	0.38	-0.5
2,766,811	+		MIT1002_02477	0.39	-1.3
2,766,819	-		MIT1002_02477	0.41	-2.8
2,766,847	-		MIT1002_02477	0.44	+2.5
2,766,857	-		MIT1002_02477	0.46	-0.6
2,766,873	+		MIT1002_02477	0.48	+0.4
2,766,935	-		MIT1002_02477	0.56	+0.9
2,766,935	-		MIT1002_02477	0.56	-1.0
2,766,936	-		MIT1002_02477	0.56	+1.3
2,766,945	-		MIT1002_02477	0.58	-0.4
2,766,994	+		MIT1002_02477	0.64	+1.9
2,767,004	+		MIT1002_02477	0.66	+0.7
2,767,004	+		MIT1002_02477	0.66	-0.7
2,767,081	+		MIT1002_02477	0.76	+0.3
2,767,089	-		MIT1002_02477	0.77	+0.9
2,767,089	-		MIT1002_02477	0.77	+0.7
2,767,150	+		MIT1002_02477	0.85	-1.0
2,767,158	-		MIT1002_02477	0.86	+0.7
2,767,158	-		MIT1002_02477	0.86	+0.1
2,767,158	-		MIT1002_02477	0.86	+0.1
2,767,217	-				+2.2
2,767,219	+				-0.7
2,767,219	+				-2.1
2,767,227	-				+0.3
2,767,232	+				+1.3
2,767,299	-				+0.2
2,767,387	+		MIT1002_02478	0.16	+3.0
2,767,402	+		MIT1002_02478	0.18	-0.4
2,767,402	+		MIT1002_02478	0.18	+3.8
2,767,403	-		MIT1002_02478	0.19	+0.1
2,767,406	+		MIT1002_02478	0.19	+0.0
2,767,406	+		MIT1002_02478	0.19	+1.1
2,767,410	-		MIT1002_02478	0.19	+0.6
2,767,410	-		MIT1002_02478	0.19	+1.5
2,767,459	-		MIT1002_02478	0.26	-0.5
2,767,466	+		MIT1002_02478	0.27	+0.2
2,767,475	+		MIT1002_02478	0.28	+0.4
2,767,475	+		MIT1002_02478	0.28	+0.5
2,767,475	+		MIT1002_02478	0.28	+2.3
2,767,475	+		MIT1002_02478	0.28	+1.5
2,767,475	+		MIT1002_02478	0.28	+0.6
2,767,483	-		MIT1002_02478	0.29	+0.2
2,767,483	-		MIT1002_02478	0.29	-0.8
2,767,511	+		MIT1002_02478	0.33	+0.3
2,767,511	+		MIT1002_02478	0.33	+0.6
2,767,519	-		MIT1002_02478	0.34	-1.0
2,767,529	-		MIT1002_02478	0.35	+1.7
2,767,529	-		MIT1002_02478	0.35	-0.6
2,767,553	+		MIT1002_02478	0.38	+0.6
2,767,555	+		MIT1002_02478	0.38	+0.5
2,767,614	+		MIT1002_02478	0.46	+0.8
2,767,711	-		MIT1002_02478	0.59	-1.5
2,767,755	+		MIT1002_02478	0.65	+2.3
2,767,763	-		MIT1002_02478	0.66	+0.3
2,767,763	-		MIT1002_02478	0.66	+0.3
2,767,808	+		MIT1002_02478	0.72	+1.2
2,767,834	+		MIT1002_02478	0.75	-0.4
2,767,834	+		MIT1002_02478	0.75	+0.5
2,767,878	+		MIT1002_02478	0.81	+0.3
2,767,879	-		MIT1002_02478	0.81	-1.1
2,767,886	-		MIT1002_02478	0.82	-0.2
2,767,928	-		MIT1002_02478	0.87	+0.3
2,767,948	+				-1.0
2,767,951	-				-0.6
2,767,992	-				+1.3
2,767,994	+				+0.8
2,767,997	-				-0.3
2,768,002	+				+0.0
2,768,002	-				-0.1
2,768,002	-				+0.4
2,768,002	-				+1.3
2,768,002	-				+2.1
2,768,002	-				-0.6
2,768,003	-				-0.3
2,768,025	+				+0.7
2,768,025	+				-0.3
2,768,033	-				+0.7
2,768,165	-		MIT1002_02479	0.74	+0.6
2,768,172	+		MIT1002_02479	0.77	-1.7
2,768,252	+		MIT1002_02480	0.18	-0.3
2,768,261	-		MIT1002_02480	0.23	-0.1
2,768,377	+		MIT1002_02480	0.83	-2.4
2,768,384	+		MIT1002_02480	0.86	+1.5
2,768,394	+				+1.9
2,768,406	+				-0.5
2,768,406	+				-0.7
2,768,468	+				+0.1
2,768,476	-				-1.4
2,768,540	+				-0.1
2,768,555	-				-0.5
2,768,560	-				-1.8
2,768,580	-				+0.8
2,768,594	+				-0.6
2,768,602	-				+0.5
2,768,602	-				-1.5
2,768,609	+				+0.3
2,768,622	-				-0.4
2,768,642	-				+2.1
2,768,653	+				-1.3
2,768,658	+				+1.4
2,768,687	-				-0.5
2,768,700	+				-0.5
2,768,748	-				+0.4
2,768,757	+				+1.8
2,768,757	+				-1.0
2,768,823	-				+0.0
2,768,830	+				-2.0
2,768,838	-				+0.4
2,768,838	-				-0.8
2,768,838	-				+1.0
2,768,869	+				+0.3
2,768,869	+				+0.4
2,768,869	+				-0.6
2,768,877	-				-0.3
2,768,901	+				+0.4
2,768,947	-				-0.0
2,768,947	-				-2.4
2,768,973	-				+1.1
2,769,012	-				-1.0