Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02442

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
2,722,856	+		MIT1002_02440	0.52	-0.6
2,722,864	-		MIT1002_02440	0.53	+0.3
2,722,874	+		MIT1002_02440	0.54	+1.4
2,722,874	+		MIT1002_02440	0.54	-0.4
2,722,876	+		MIT1002_02440	0.54	+1.0
2,722,912	+		MIT1002_02440	0.59	+0.3
2,722,932	+		MIT1002_02440	0.61	+0.9
2,722,936	+		MIT1002_02440	0.62	-0.2
2,722,936	+		MIT1002_02440	0.62	-2.0
2,722,937	+		MIT1002_02440	0.62	+0.6
2,722,945	-		MIT1002_02440	0.63	-1.0
2,722,975	-		MIT1002_02440	0.66	+0.6
2,722,979	+		MIT1002_02440	0.67	+1.3
2,722,988	-		MIT1002_02440	0.68	+2.3
2,723,044	-		MIT1002_02440	0.75	-0.8
2,723,044	-		MIT1002_02440	0.75	-1.1
2,723,046	+		MIT1002_02440	0.75	-0.7
2,723,056	-		MIT1002_02440	0.77	-2.0
2,723,089	-		MIT1002_02440	0.81	-0.7
2,723,118	-		MIT1002_02440	0.84	+0.2
2,723,174	+				+1.7
2,723,180	-				-0.5
2,723,220	-				-4.1
2,723,220	-				-1.1
2,723,563	+		MIT1002_02441	0.43	-1.2
2,723,563	+		MIT1002_02441	0.43	-2.0
2,723,568	+		MIT1002_02441	0.44	-2.7
2,723,586	+		MIT1002_02441	0.50	-2.2
2,723,587	+		MIT1002_02441	0.50	-3.8
2,723,601	-		MIT1002_02441	0.55	-0.0
2,723,615	+		MIT1002_02441	0.59	-0.9
2,723,615	+		MIT1002_02441	0.59	-0.0
2,723,615	+		MIT1002_02441	0.59	-3.7
2,723,623	-		MIT1002_02441	0.62	-3.3
2,723,720	+				-2.6
2,723,876	+				-1.4
2,723,876	+				-0.2
2,723,884	-				+0.2
2,723,936	-				-0.1
2,723,957	+				-0.8
2,723,957	+				-0.6
2,723,969	-		MIT1002_02442	0.11	+2.0
2,723,978	+		MIT1002_02442	0.12	+0.5
2,723,984	+		MIT1002_02442	0.12	-1.2
2,723,992	-		MIT1002_02442	0.13	-0.5
2,724,049	+		MIT1002_02442	0.19	+0.6
2,724,055	-		MIT1002_02442	0.19	-0.3
2,724,057	-		MIT1002_02442	0.20	-0.9
2,724,105	+		MIT1002_02442	0.24	-0.4
2,724,113	-		MIT1002_02442	0.25	+1.0
2,724,226	-		MIT1002_02442	0.36	-0.0
2,724,280	+		MIT1002_02442	0.41	-1.0
2,724,296	+		MIT1002_02442	0.43	+0.1
2,724,298	+		MIT1002_02442	0.43	-0.9
2,724,328	+		MIT1002_02442	0.46	+1.1
2,724,336	+		MIT1002_02442	0.46	+0.2
2,724,336	+		MIT1002_02442	0.46	+0.1
2,724,336	+		MIT1002_02442	0.46	-1.4
2,724,336	+		MIT1002_02442	0.46	-0.3
2,724,336	-		MIT1002_02442	0.46	+1.3
2,724,336	-		MIT1002_02442	0.46	+1.2
2,724,344	-		MIT1002_02442	0.47	-0.7
2,724,428	-		MIT1002_02442	0.55	-1.0
2,724,487	+		MIT1002_02442	0.61	+0.1
2,724,487	+		MIT1002_02442	0.61	-0.3
2,724,487	+		MIT1002_02442	0.61	-0.2
2,724,487	+		MIT1002_02442	0.61	+0.2
2,724,495	-		MIT1002_02442	0.62	+0.1
2,724,607	+		MIT1002_02442	0.73	-2.3
2,724,614	+		MIT1002_02442	0.73	-1.2
2,724,614	+		MIT1002_02442	0.73	+0.7
2,724,622	-		MIT1002_02442	0.74	+1.3
2,724,658	-		MIT1002_02442	0.78	-0.8
2,724,685	+		MIT1002_02442	0.80	+0.1
2,724,715	-		MIT1002_02442	0.83	+0.3
2,724,720	-		MIT1002_02442	0.84	+0.1
2,724,720	-		MIT1002_02442	0.84	+0.0
2,724,737	+		MIT1002_02442	0.85	+0.3
2,724,737	+		MIT1002_02442	0.85	+2.0
2,724,737	+		MIT1002_02442	0.85	+0.9
2,724,745	-		MIT1002_02442	0.86	-0.5
2,724,745	-		MIT1002_02442	0.86	+1.5
2,724,784	-		MIT1002_02442	0.90	-0.1
2,724,902	-				+0.9
2,724,934	-				+2.0
2,724,942	+				+0.1
2,725,000	-				+0.6
2,725,029	-				-0.5
2,725,029	-				-0.1
2,725,029	-				+0.2
2,725,059	+		MIT1002_02443	0.12	+0.9
2,725,059	+		MIT1002_02443	0.12	+0.0
2,725,059	+		MIT1002_02443	0.12	+2.3
2,725,059	+		MIT1002_02443	0.12	-0.3
2,725,059	+		MIT1002_02443	0.12	+0.3
2,725,067	-		MIT1002_02443	0.13	-4.1
2,725,067	-		MIT1002_02443	0.13	-2.0
2,725,101	-		MIT1002_02443	0.16	+0.7
2,725,101	-		MIT1002_02443	0.16	-0.1
2,725,179	+		MIT1002_02443	0.22	-0.7
2,725,218	+		MIT1002_02443	0.25	-2.1
2,725,228	+		MIT1002_02443	0.26	-0.0
2,725,228	+		MIT1002_02443	0.26	-3.9
2,725,236	-		MIT1002_02443	0.26	-0.5
2,725,237	-		MIT1002_02443	0.26	+0.0
2,725,304	+		MIT1002_02443	0.31	+0.1
2,725,393	-		MIT1002_02443	0.38	+0.4
2,725,393	-		MIT1002_02443	0.38	+0.8
2,725,395	+		MIT1002_02443	0.39	+0.6
2,725,453	-		MIT1002_02443	0.43	-0.9
2,725,494	-		MIT1002_02443	0.46	+0.5
2,725,510	+		MIT1002_02443	0.48	+0.1
2,725,513	-		MIT1002_02443	0.48	+0.3
2,725,517	-		MIT1002_02443	0.48	+0.3
2,725,531	+		MIT1002_02443	0.49	+0.3
2,725,555	-		MIT1002_02443	0.51	-1.8
2,725,566	-		MIT1002_02443	0.52	-1.4
2,725,573	+		MIT1002_02443	0.53	+0.5
2,725,660	+		MIT1002_02443	0.59	-0.3
2,725,660	+		MIT1002_02443	0.59	-0.3
2,725,660	+		MIT1002_02443	0.59	+1.2
2,725,660	+		MIT1002_02443	0.59	-0.5
2,725,668	-		MIT1002_02443	0.60	+0.0
2,725,668	-		MIT1002_02443	0.60	-0.8
2,725,668	-		MIT1002_02443	0.60	+0.2
2,725,668	-		MIT1002_02443	0.60	+0.4
2,725,668	-		MIT1002_02443	0.60	+1.1
2,725,668	-		MIT1002_02443	0.60	-1.9
2,725,740	-		MIT1002_02443	0.66	+1.4
2,725,775	-		MIT1002_02443	0.68	-1.5
2,725,814	-		MIT1002_02443	0.71	-0.1
2,725,814	-		MIT1002_02443	0.71	+0.5
2,725,816	+		MIT1002_02443	0.72	+0.7
2,725,816	+		MIT1002_02443	0.72	-2.0
2,725,816	+		MIT1002_02443	0.72	+0.2
2,725,816	+		MIT1002_02443	0.72	-0.0
2,725,816	+		MIT1002_02443	0.72	-0.1
2,725,816	+		MIT1002_02443	0.72	-0.0
2,725,824	-		MIT1002_02443	0.72	-0.5
2,725,830	-		MIT1002_02443	0.73	-2.0
2,725,865	+		MIT1002_02443	0.75	-0.3
2,725,866	-		MIT1002_02443	0.75	+0.4