Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02123

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
2,383,747	-		MIT1002_02121	0.33	-0.7
2,383,765	+		MIT1002_02121	0.38	-0.2
2,383,773	-		MIT1002_02121	0.40	-1.8
2,383,773	-		MIT1002_02121	0.40	+0.7
2,383,863	+		MIT1002_02121	0.66	+0.7
2,383,915	+		MIT1002_02121	0.80	-0.6
2,383,944	+		MIT1002_02121	0.88	-0.1
2,383,948	-		MIT1002_02121	0.89	+1.3
2,384,013	-				+0.6
2,384,013	-				-0.6
2,384,033	-				+0.9
2,384,147	+				-1.0
2,384,147	+				+0.6
2,384,155	-		MIT1002_02122	0.10	+0.2
2,384,155	-		MIT1002_02122	0.10	+0.2
2,384,157	+		MIT1002_02122	0.11	-0.6
2,384,205	-		MIT1002_02122	0.22	+0.4
2,384,224	-		MIT1002_02122	0.27	-0.1
2,384,234	-		MIT1002_02122	0.29	-0.3
2,384,234	-		MIT1002_02122	0.29	-0.5
2,384,234	-		MIT1002_02122	0.29	-1.6
2,384,280	+		MIT1002_02122	0.40	-1.7
2,384,341	-		MIT1002_02122	0.54	-0.8
2,384,392	+		MIT1002_02122	0.66	+0.9
2,384,397	+		MIT1002_02122	0.68	-0.9
2,384,400	-		MIT1002_02122	0.68	-1.6
2,384,426	-		MIT1002_02122	0.74	-1.3
2,384,452	+		MIT1002_02122	0.81	-0.4
2,384,452	+		MIT1002_02122	0.81	+1.8
2,384,463	+		MIT1002_02122	0.83	+0.2
2,384,471	-		MIT1002_02122	0.85	+2.0
2,384,498	-				-0.7
2,384,533	-				-0.4
2,384,640	-				+0.8
2,384,780	+				+0.4
2,384,810	+		MIT1002_02123	0.15	-0.4
2,384,810	+		MIT1002_02123	0.15	-0.3
2,384,810	+		MIT1002_02123	0.15	-2.6
2,384,818	-		MIT1002_02123	0.17	+0.0
2,384,821	+		MIT1002_02123	0.18	+0.8
2,384,868	+		MIT1002_02123	0.27	-0.9
2,384,877	-		MIT1002_02123	0.29	-0.6
2,385,150	+		MIT1002_02123	0.87	+0.3
2,385,163	-		MIT1002_02123	0.89	+0.1
2,385,220	+				+0.0
2,385,228	-				+0.7
2,385,244	+				+0.1
2,385,275	-				-4.3
2,385,342	+				-1.2
2,385,342	+				+1.3
2,385,342	+				-0.0
2,385,342	+				+0.3
2,385,342	+				+1.6
2,385,342	+				+1.1
2,385,342	+				-1.1
2,385,342	+				-0.5
2,385,349	-				+0.2
2,385,350	-				-0.8
2,385,350	-				+0.2
2,385,350	-				+0.1
2,385,350	-				+0.1
2,385,455	+				+2.3
2,385,455	+				+0.3
2,385,455	+				-1.7
2,385,463	-		MIT1002_02124	0.10	-0.4
2,385,463	-		MIT1002_02124	0.10	-0.9
2,385,463	-		MIT1002_02124	0.10	-0.7
2,385,463	-		MIT1002_02124	0.10	-0.3
2,385,463	-		MIT1002_02124	0.10	+0.7
2,385,463	-		MIT1002_02124	0.10	-0.3
2,385,463	-		MIT1002_02124	0.10	+0.2
2,385,465	+		MIT1002_02124	0.11	+0.3
2,385,524	-		MIT1002_02124	0.14	-0.2
2,385,541	-		MIT1002_02124	0.15	+0.0
2,385,598	+		MIT1002_02124	0.19	-2.0
2,385,615	+		MIT1002_02124	0.20	+0.1
2,385,615	+		MIT1002_02124	0.20	-0.3
2,385,630	+		MIT1002_02124	0.21	+1.4
2,385,638	-		MIT1002_02124	0.21	+0.2
2,385,640	-		MIT1002_02124	0.21	+0.4
2,385,647	+		MIT1002_02124	0.22	-0.8
2,385,678	-		MIT1002_02124	0.24	+1.3
2,385,688	-		MIT1002_02124	0.24	+1.7
2,385,835	+		MIT1002_02124	0.33	+0.6
2,385,842	+		MIT1002_02124	0.34	-0.6
2,385,843	-		MIT1002_02124	0.34	-0.3
2,385,850	-		MIT1002_02124	0.34	-1.0
2,385,852	+		MIT1002_02124	0.34	-0.1
2,385,852	+		MIT1002_02124	0.34	+1.5
2,385,877	+		MIT1002_02124	0.36	+2.6
2,385,885	-		MIT1002_02124	0.36	-0.9
2,385,910	-		MIT1002_02124	0.38	+0.6
2,385,912	+		MIT1002_02124	0.38	-0.1
2,385,920	-		MIT1002_02124	0.38	-2.1
2,385,956	+		MIT1002_02124	0.41	-0.6
2,385,956	+		MIT1002_02124	0.41	+0.5
2,385,956	+		MIT1002_02124	0.41	-0.1
2,385,956	+		MIT1002_02124	0.41	+1.9
2,385,956	+		MIT1002_02124	0.41	+0.9
2,385,964	-		MIT1002_02124	0.41	+0.5
2,385,976	-		MIT1002_02124	0.42	+0.9
2,385,999	+		MIT1002_02124	0.43	+0.0
2,386,007	-		MIT1002_02124	0.44	-0.4
2,386,013	+		MIT1002_02124	0.44	-1.7
2,386,086	-		MIT1002_02124	0.49	-0.1