Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02088

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
2,350,214	-		MIT1002_02086	0.82	-0.9
2,350,216	+		MIT1002_02086	0.82	+0.3
2,350,224	-		MIT1002_02086	0.83	+0.3
2,350,224	-		MIT1002_02086	0.83	-0.7
2,350,279	-		MIT1002_02086	0.86	+1.7
2,350,281	+		MIT1002_02086	0.86	-1.7
2,350,343	+		MIT1002_02086	0.90	-0.4
2,350,344	+		MIT1002_02086	0.90	-0.5
2,350,429	-				+0.9
2,350,429	-				-0.7
2,350,450	+				+1.3
2,350,462	+				+0.2
2,350,463	+				+0.7
2,350,537	+				-0.1
2,350,584	-				+0.2
2,350,597	+				+0.0
2,350,605	-				-0.6
2,350,605	-				-0.5
2,350,610	-				+0.1
2,350,610	-				-0.6
2,350,610	-				+0.3
2,350,671	+				+0.7
2,350,749	+				-0.9
2,350,884	-		MIT1002_02087	0.18	+0.4
2,350,892	-		MIT1002_02087	0.21	-1.3
2,350,899	+		MIT1002_02087	0.24	-0.3
2,351,032	-		MIT1002_02087	0.75	+0.3
2,351,089	+				+0.8
2,351,116	+				+0.7
2,351,125	+				-0.5
2,351,125	+				-0.5
2,351,130	+				+2.7
2,351,180	+				-0.5
2,351,206	+				-1.8
2,351,236	-		MIT1002_02088	0.10	-0.3
2,351,329	-		MIT1002_02088	0.19	-0.0
2,351,394	-		MIT1002_02088	0.26	+1.2
2,351,586	+		MIT1002_02088	0.45	+0.6
2,351,594	-		MIT1002_02088	0.46	-1.0
2,351,598	-		MIT1002_02088	0.46	+0.5
2,351,674	+		MIT1002_02088	0.54	+0.4
2,351,682	-		MIT1002_02088	0.55	-0.0
2,351,682	-		MIT1002_02088	0.55	-1.7
2,351,682	-		MIT1002_02088	0.55	+0.7
2,351,682	-		MIT1002_02088	0.55	+0.8
2,351,707	-		MIT1002_02088	0.57	+0.1
2,351,811	+		MIT1002_02088	0.68	-2.3
2,351,910	+		MIT1002_02088	0.77	+1.6
2,351,975	+		MIT1002_02088	0.84	+0.9
2,352,020	+		MIT1002_02088	0.88	+0.9
2,352,122	+				-2.5
2,352,130	-				+0.0
2,352,278	-		MIT1002_02089	0.54	+1.9
2,352,556	+				+0.0
2,352,557	+				+0.3
2,352,565	-				-0.6
2,352,565	-				+0.0
2,352,662	-		MIT1002_02090	0.16	-1.0
2,352,662	-		MIT1002_02090	0.16	+0.7
2,352,727	-		MIT1002_02090	0.20	-0.2
2,352,753	-		MIT1002_02090	0.22	+0.8
2,352,828	+		MIT1002_02090	0.27	-0.0
2,352,876	+		MIT1002_02090	0.30	+0.1
2,352,876	+		MIT1002_02090	0.30	+0.4
2,352,876	+		MIT1002_02090	0.30	+0.3
2,352,884	-		MIT1002_02090	0.31	+0.6
2,352,884	-		MIT1002_02090	0.31	-0.6
2,352,884	-		MIT1002_02090	0.31	+0.6
2,352,884	-		MIT1002_02090	0.31	-1.2
2,352,888	+		MIT1002_02090	0.31	+0.1
2,352,894	-		MIT1002_02090	0.31	+0.1
2,352,921	+		MIT1002_02090	0.33	+0.6
2,353,020	-		MIT1002_02090	0.39	+0.0
2,353,130	+		MIT1002_02090	0.47	+0.7