Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01996

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
2,230,914	+				+0.6
2,230,969	-		MIT1002_01995	0.14	-0.6
2,230,969	-		MIT1002_01995	0.14	-0.4
2,230,988	-		MIT1002_01995	0.16	-3.4
2,231,091	-		MIT1002_01995	0.26	-1.5
2,231,136	+		MIT1002_01995	0.31	-3.9
2,231,144	-		MIT1002_01995	0.31	-1.8
2,231,180	-		MIT1002_01995	0.35	-2.5
2,231,202	+		MIT1002_01995	0.37	-4.2
2,231,210	-		MIT1002_01995	0.38	-2.6
2,231,330	-		MIT1002_01995	0.50	-2.0
2,231,356	+		MIT1002_01995	0.53	-3.0
2,231,356	+		MIT1002_01995	0.53	-0.1
2,231,356	+		MIT1002_01995	0.53	-0.5
2,231,364	-		MIT1002_01995	0.53	-3.2
2,231,364	-		MIT1002_01995	0.53	-1.8
2,231,374	-		MIT1002_01995	0.54	-1.4
2,231,375	-		MIT1002_01995	0.55	-1.2
2,231,423	+		MIT1002_01995	0.59	-1.6
2,231,447	+		MIT1002_01995	0.62	-2.1
2,231,462	-		MIT1002_01995	0.63	-0.4
2,231,462	-		MIT1002_01995	0.63	+1.8
2,231,558	-		MIT1002_01995	0.73	-2.9
2,231,568	-		MIT1002_01995	0.74	-1.1
2,231,606	+		MIT1002_01995	0.78	-2.6
2,231,624	-		MIT1002_01995	0.80	-3.6
2,231,752	-				+1.9
2,231,782	+				-0.7
2,231,807	-				-0.7
2,231,821	+				-0.4
2,231,844	+				+0.8
2,231,852	-				-0.9
2,231,852	-				+1.6
2,231,860	-				+1.8
2,231,898	-				+0.9
2,231,991	-		MIT1002_01996	0.43	+1.3
2,232,040	+		MIT1002_01996	0.63	-0.7
2,232,076	-		MIT1002_01996	0.78	+1.0
2,232,204	-				+0.9
2,232,204	-				-0.7
2,232,213	-				-1.8
2,232,316	-				-0.6
2,232,331	+				-0.6
2,232,334	-				-1.6
2,232,426	+				-0.8
2,232,496	-				+1.0
2,232,506	-				+2.7
2,232,540	+				+0.5
2,232,548	-				-1.6
2,232,805	-		MIT1002_01997	0.16	+1.8
2,232,888	+		MIT1002_01997	0.24	+0.7
2,232,896	-		MIT1002_01997	0.25	-1.6
2,233,087	-		MIT1002_01997	0.44	-0.4
2,233,123	-		MIT1002_01997	0.48	+0.8