Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01993

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
2,227,492	+				+1.6
2,227,492	+				-1.8
2,227,492	+				-0.2
2,227,500	-				+1.3
2,227,500	-				-1.4
2,227,500	-				-0.8
2,227,500	-				+2.2
2,227,500	-				+1.5
2,227,527	+				+0.4
2,227,527	+				-0.1
2,227,620	-		MIT1002_01992	0.21	-1.1
2,227,692	-		MIT1002_01992	0.30	-0.8
2,227,711	+		MIT1002_01992	0.32	+1.3
2,227,711	+		MIT1002_01992	0.32	-0.8
2,228,089	+		MIT1002_01992	0.77	-1.1
2,228,222	+				+0.5
2,228,230	+				-0.4
2,228,402	-				+1.2
2,228,402	-				-0.5
2,228,402	-				-0.9
2,228,493	+				+0.8
2,228,583	-		MIT1002_01993	0.13	-2.4
2,228,592	+		MIT1002_01993	0.14	-1.1
2,228,603	+		MIT1002_01993	0.14	+0.6
2,228,650	+		MIT1002_01993	0.17	+0.8
2,228,658	-		MIT1002_01993	0.18	-0.0
2,228,658	-		MIT1002_01993	0.18	-0.1
2,228,676	+		MIT1002_01993	0.19	-0.3
2,228,721	+		MIT1002_01993	0.22	+0.6
2,228,721	+		MIT1002_01993	0.22	+0.2
2,228,772	+		MIT1002_01993	0.25	+1.2
2,228,802	-		MIT1002_01993	0.27	+1.2
2,228,802	-		MIT1002_01993	0.27	+0.6
2,228,865	+		MIT1002_01993	0.30	-1.4
2,229,209	+		MIT1002_01993	0.51	-1.5
2,229,216	+		MIT1002_01993	0.52	+0.6
2,229,223	-		MIT1002_01993	0.52	+0.2
2,229,295	+		MIT1002_01993	0.57	+0.8
2,229,423	+		MIT1002_01993	0.64	+0.6
2,229,480	+		MIT1002_01993	0.68	+0.6
2,229,489	+		MIT1002_01993	0.68	-1.4
2,229,516	+		MIT1002_01993	0.70	-0.2
2,229,524	+		MIT1002_01993	0.71	+0.4
2,229,524	-		MIT1002_01993	0.71	+0.8
2,229,524	-		MIT1002_01993	0.71	+0.8
2,229,526	+		MIT1002_01993	0.71	+0.3
2,229,534	-		MIT1002_01993	0.71	+0.4
2,229,569	+		MIT1002_01993	0.73	-0.6
2,229,591	+		MIT1002_01993	0.75	-3.4
2,229,591	-		MIT1002_01993	0.75	-1.4
2,229,697	+		MIT1002_01993	0.81	+1.0
2,229,697	+		MIT1002_01993	0.81	+1.7
2,229,697	+		MIT1002_01993	0.81	+1.0
2,229,705	-		MIT1002_01993	0.82	-0.1
2,229,707	+		MIT1002_01993	0.82	+1.2
2,229,707	+		MIT1002_01993	0.82	-0.4
2,229,721	+		MIT1002_01993	0.83	+0.2
2,229,780	-		MIT1002_01993	0.86	-0.4
2,229,788	-		MIT1002_01993	0.87	-1.3
2,229,789	+		MIT1002_01993	0.87	-1.0
2,229,830	-		MIT1002_01993	0.89	-0.4
2,229,907	+				+0.2
2,229,927	+				+0.3
2,229,990	-				+2.2
2,230,115	-				-2.1
2,230,151	-				-0.7
2,230,165	+				-1.1
2,230,173	-				-0.7
2,230,177	+				-0.1
2,230,184	-		MIT1002_01994	0.10	+0.5
2,230,237	+		MIT1002_01994	0.20	+0.8
2,230,272	-		MIT1002_01994	0.26	-2.1
2,230,337	+		MIT1002_01994	0.38	+0.8
2,230,368	-		MIT1002_01994	0.43	+0.6
2,230,394	-		MIT1002_01994	0.48	-2.3
2,230,430	-		MIT1002_01994	0.54	+0.5
2,230,452	-		MIT1002_01994	0.58	-1.7
2,230,505	-		MIT1002_01994	0.68	+1.2
2,230,562	+		MIT1002_01994	0.78	-2.6
2,230,592	+		MIT1002_01994	0.84	+1.6
2,230,720	-				+0.3
2,230,809	-				-1.1
2,230,823	+				-0.5
2,230,823	+				+0.9
2,230,831	-				-0.5
2,230,914	+				+0.6
2,230,969	-		MIT1002_01995	0.14	-0.6
2,230,969	-		MIT1002_01995	0.14	-0.4
2,230,988	-		MIT1002_01995	0.16	-3.4