Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01950

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01949 and MIT1002_01950 are separated by 152 nucleotidesMIT1002_01950 and MIT1002_01951 overlap by 1 nucleotides MIT1002_01949: MIT1002_01949 - Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, at 2,165,364 to 2,166,875 _01949 MIT1002_01950: MIT1002_01950 - Succinyl-CoA ligase [ADP-forming] subunit beta, at 2,167,028 to 2,168,194 _01950 MIT1002_01951: MIT1002_01951 - Succinyl-CoA ligase [ADP-forming] subunit alpha, at 2,168,194 to 2,169,066 _01951 Position (kb) 2167 2168 2169Strain fitness (log2 ratio) -1 0 1 2at 2166.891 kb on + strandat 2169.136 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
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2,166,891 + +2.2
2,169,136 - +0.7

Or see this region's nucleotide sequence