Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01892

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01889 and MIT1002_01890 are separated by 269 nucleotidesMIT1002_01890 and MIT1002_01891 are separated by 12 nucleotidesMIT1002_01891 and MIT1002_01892 are separated by 107 nucleotidesMIT1002_01892 and MIT1002_01893 are separated by 101 nucleotides MIT1002_01889: MIT1002_01889 - hypothetical protein, at 2,103,530 to 2,103,823 _01889 MIT1002_01890: MIT1002_01890 - hypothetical protein, at 2,104,093 to 2,104,269 _01890 MIT1002_01891: MIT1002_01891 - hypothetical protein, at 2,104,282 to 2,104,458 _01891 MIT1002_01892: MIT1002_01892 - hypothetical protein, at 2,104,566 to 2,105,390 _01892 MIT1002_01893: MIT1002_01893 - DNA repair protein RecN, at 2,105,492 to 2,108,242 _01893 Position (kb) 2104 2105 2106Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2103.733 kb on - strand, within MIT1002_01889at 2103.790 kb on + strand, within MIT1002_01889at 2104.145 kb on + strand, within MIT1002_01890at 2104.174 kb on - strand, within MIT1002_01890at 2104.178 kb on - strand, within MIT1002_01890at 2104.178 kb on - strand, within MIT1002_01890at 2104.260 kb on + strandat 2104.260 kb on + strandat 2104.548 kb on + strandat 2104.555 kb on + strandat 2104.734 kb on - strand, within MIT1002_01892at 2104.749 kb on - strand, within MIT1002_01892at 2104.794 kb on - strand, within MIT1002_01892at 2104.922 kb on + strand, within MIT1002_01892at 2104.927 kb on + strand, within MIT1002_01892at 2104.930 kb on - strand, within MIT1002_01892at 2104.935 kb on - strand, within MIT1002_01892at 2104.937 kb on + strand, within MIT1002_01892at 2104.945 kb on - strand, within MIT1002_01892at 2105.122 kb on + strand, within MIT1002_01892at 2105.206 kb on + strand, within MIT1002_01892at 2105.295 kb on - strand, within MIT1002_01892at 2105.310 kb on - strandat 2105.324 kb on + strandat 2105.424 kb on + strandat 2105.424 kb on + strandat 2105.459 kb on + strandat 2105.459 kb on + strandat 2105.467 kb on - strandat 2105.467 kb on - strandat 2105.467 kb on - strandat 2105.467 kb on - strandat 2105.513 kb on - strandat 2105.541 kb on + strandat 2105.549 kb on - strandat 2105.595 kb on + strandat 2105.630 kb on + strandat 2105.638 kb on + strandat 2105.638 kb on - strandat 2105.638 kb on - strandat 2105.638 kb on - strandat 2105.734 kb on - strandat 2105.812 kb on + strand, within MIT1002_01893at 2105.966 kb on - strand, within MIT1002_01893at 2106.035 kb on + strand, within MIT1002_01893at 2106.035 kb on + strand, within MIT1002_01893at 2106.043 kb on - strand, within MIT1002_01893at 2106.139 kb on + strand, within MIT1002_01893at 2106.140 kb on + strand, within MIT1002_01893at 2106.147 kb on - strand, within MIT1002_01893at 2106.148 kb on - strand, within MIT1002_01893at 2106.159 kb on + strand, within MIT1002_01893at 2106.168 kb on - strand, within MIT1002_01893at 2106.179 kb on - strand, within MIT1002_01893at 2106.188 kb on - strand, within MIT1002_01893at 2106.204 kb on - strand, within MIT1002_01893at 2106.220 kb on - strand, within MIT1002_01893at 2106.244 kb on + strand, within MIT1002_01893at 2106.266 kb on + strand, within MIT1002_01893at 2106.268 kb on + strand, within MIT1002_01893at 2106.268 kb on + strand, within MIT1002_01893at 2106.268 kb on + strand, within MIT1002_01893at 2106.274 kb on - strand, within MIT1002_01893at 2106.274 kb on - strand, within MIT1002_01893at 2106.309 kb on + strand, within MIT1002_01893at 2106.331 kb on + strand, within MIT1002_01893at 2106.339 kb on - strand, within MIT1002_01893

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
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2,103,733 - MIT1002_01889 0.69 +2.5
2,103,790 + MIT1002_01889 0.88 -0.3
2,104,145 + MIT1002_01890 0.29 -0.1
2,104,174 - MIT1002_01890 0.46 -1.0
2,104,178 - MIT1002_01890 0.48 +0.8
2,104,178 - MIT1002_01890 0.48 +0.5
2,104,260 + +0.6
2,104,260 + -1.8
2,104,548 + -0.6
2,104,555 + +0.7
2,104,734 - MIT1002_01892 0.20 +2.3
2,104,749 - MIT1002_01892 0.22 -0.1
2,104,794 - MIT1002_01892 0.28 -0.1
2,104,922 + MIT1002_01892 0.43 +0.8
2,104,927 + MIT1002_01892 0.44 +0.2
2,104,930 - MIT1002_01892 0.44 +1.1
2,104,935 - MIT1002_01892 0.45 +0.9
2,104,937 + MIT1002_01892 0.45 +1.7
2,104,945 - MIT1002_01892 0.46 +0.6
2,105,122 + MIT1002_01892 0.67 -1.5
2,105,206 + MIT1002_01892 0.78 +1.5
2,105,295 - MIT1002_01892 0.88 -2.5
2,105,310 - -0.3
2,105,324 + -0.3
2,105,424 + +0.7
2,105,424 + -1.1
2,105,459 + +0.7
2,105,459 + -0.8
2,105,467 - +0.0
2,105,467 - -0.2
2,105,467 - -1.4
2,105,467 - -0.1
2,105,513 - +0.4
2,105,541 + -0.1
2,105,549 - -2.5
2,105,595 + -0.2
2,105,630 + -0.1
2,105,638 + +0.2
2,105,638 - +0.9
2,105,638 - -0.4
2,105,638 - -1.1
2,105,734 - -0.6
2,105,812 + MIT1002_01893 0.12 -0.6
2,105,966 - MIT1002_01893 0.17 +0.4
2,106,035 + MIT1002_01893 0.20 +0.8
2,106,035 + MIT1002_01893 0.20 +0.2
2,106,043 - MIT1002_01893 0.20 +1.0
2,106,139 + MIT1002_01893 0.24 -0.9
2,106,140 + MIT1002_01893 0.24 +1.6
2,106,147 - MIT1002_01893 0.24 -2.6
2,106,148 - MIT1002_01893 0.24 -1.0
2,106,159 + MIT1002_01893 0.24 +0.1
2,106,168 - MIT1002_01893 0.25 +0.6
2,106,179 - MIT1002_01893 0.25 -1.5
2,106,188 - MIT1002_01893 0.25 +0.7
2,106,204 - MIT1002_01893 0.26 +0.3
2,106,220 - MIT1002_01893 0.26 -0.5
2,106,244 + MIT1002_01893 0.27 +2.8
2,106,266 + MIT1002_01893 0.28 +0.3
2,106,268 + MIT1002_01893 0.28 +1.3
2,106,268 + MIT1002_01893 0.28 -0.8
2,106,268 + MIT1002_01893 0.28 -1.8
2,106,274 - MIT1002_01893 0.28 -0.6
2,106,274 - MIT1002_01893 0.28 +1.0
2,106,309 + MIT1002_01893 0.30 -0.2
2,106,331 + MIT1002_01893 0.30 +0.4
2,106,339 - MIT1002_01893 0.31 +0.6

Or see this region's nucleotide sequence