Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01368

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
1,516,481	-		MIT1002_01366	0.82	-0.0
1,516,495	-		MIT1002_01366	0.83	+0.4
1,516,501	+		MIT1002_01366	0.84	+0.4
1,516,520	+		MIT1002_01366	0.86	-1.8
1,516,578	-				+0.2
1,516,625	-				+1.4
1,516,669	-				-1.0
1,516,884	+		MIT1002_01367	0.33	+0.4
1,516,893	-		MIT1002_01367	0.34	-0.1
1,516,900	-		MIT1002_01367	0.36	-0.0
1,516,942	+		MIT1002_01367	0.42	-0.0
1,516,968	-		MIT1002_01367	0.47	+0.3
1,516,973	+		MIT1002_01367	0.48	+0.6
1,516,981	-		MIT1002_01367	0.49	+0.5
1,516,981	-		MIT1002_01367	0.49	-0.5
1,516,991	+		MIT1002_01367	0.50	+0.8
1,516,992	-		MIT1002_01367	0.51	+0.8
1,517,010	+		MIT1002_01367	0.54	-1.3
1,517,010	+		MIT1002_01367	0.54	-1.8
1,517,018	-		MIT1002_01367	0.55	-0.1
1,517,018	-		MIT1002_01367	0.55	+0.9
1,517,092	+		MIT1002_01367	0.67	-2.4
1,517,136	+		MIT1002_01367	0.74	+0.1
1,517,191	+		MIT1002_01367	0.83	+0.6
1,517,297	+				-0.4
1,517,357	+				+1.1
1,517,567	-				-1.4
1,517,577	+				-0.6
1,517,617	+				-1.0
1,517,617	+				+1.7
1,517,617	+				+0.5
1,517,617	+				-1.2
1,517,625	-				-0.2
1,517,625	-				+0.4
1,517,743	-		MIT1002_01368	0.16	-1.1
1,517,849	+		MIT1002_01368	0.23	+1.5
1,517,887	+		MIT1002_01368	0.25	+0.8
1,517,980	-		MIT1002_01368	0.31	-0.3
1,517,987	-		MIT1002_01368	0.31	+0.8
1,517,990	+		MIT1002_01368	0.31	+1.1
1,518,122	-		MIT1002_01368	0.39	-2.0
1,518,140	+		MIT1002_01368	0.40	-3.1
1,518,150	+		MIT1002_01368	0.41	+0.4
1,518,158	+		MIT1002_01368	0.42	+1.7
1,518,214	+		MIT1002_01368	0.45	+6.6
1,518,214	+		MIT1002_01368	0.45	-0.8
1,518,214	+		MIT1002_01368	0.45	-0.3
1,518,222	-		MIT1002_01368	0.45	-0.0
1,518,222	-		MIT1002_01368	0.45	-0.9
1,518,251	+		MIT1002_01368	0.47	+0.9
1,518,285	-		MIT1002_01368	0.49	+0.8
1,518,291	+		MIT1002_01368	0.50	+1.4
1,518,299	-		MIT1002_01368	0.50	+1.2
1,518,331	-		MIT1002_01368	0.52	+0.1
1,518,362	+		MIT1002_01368	0.54	+1.1
1,518,367	+		MIT1002_01368	0.54	+1.3
1,518,382	+		MIT1002_01368	0.55	-1.4
1,518,484	+		MIT1002_01368	0.61	-0.0
1,518,521	-		MIT1002_01368	0.64	+0.1
1,518,547	-		MIT1002_01368	0.65	-0.5
1,518,643	+		MIT1002_01368	0.71	+0.7
1,518,643	+		MIT1002_01368	0.71	+2.4
1,518,643	+		MIT1002_01368	0.71	+0.9
1,518,768	-		MIT1002_01368	0.78	-0.5
1,518,798	+		MIT1002_01368	0.80	-0.2
1,518,806	-		MIT1002_01368	0.81	+0.4
1,518,806	-		MIT1002_01368	0.81	-0.6
1,518,832	-		MIT1002_01368	0.82	-1.0
1,518,849	-		MIT1002_01368	0.83	+1.2
1,518,864	+		MIT1002_01368	0.84	-0.7
1,518,867	-		MIT1002_01368	0.84	-1.0
1,518,869	+		MIT1002_01368	0.85	+0.4
1,518,877	-		MIT1002_01368	0.85	+0.3
1,518,877	-		MIT1002_01368	0.85	-0.2
1,518,912	-		MIT1002_01368	0.87	+0.7
1,518,946	+		MIT1002_01368	0.89	+0.0
1,518,946	+		MIT1002_01368	0.89	+1.3
1,518,954	-		MIT1002_01368	0.90	-1.9
1,518,975	+				-0.4
1,519,005	+				+0.4
1,519,007	+				-0.4
1,519,015	+				+0.5
1,519,015	-				+0.1
1,519,015	-				-0.2
1,519,015	-				+1.6
1,519,015	-				-0.9
1,519,079	+				+1.5
1,519,150	-				+0.4
1,519,215	-				+0.9
1,519,254	+		MIT1002_01369	0.11	+1.3
1,519,327	+		MIT1002_01369	0.17	-1.2
1,519,427	-		MIT1002_01369	0.25	+0.7
1,519,462	-		MIT1002_01369	0.27	+1.1
1,519,474	+		MIT1002_01369	0.28	-1.1
1,519,557	+		MIT1002_01369	0.35	-0.1
1,519,634	+		MIT1002_01369	0.41	+0.5
1,519,634	+		MIT1002_01369	0.41	+0.8
1,519,663	-		MIT1002_01369	0.44	+1.0
1,519,799	+		MIT1002_01369	0.54	-0.4
1,519,833	+		MIT1002_01369	0.57	-0.1
1,519,929	-		MIT1002_01369	0.65	-1.1
1,519,934	-		MIT1002_01369	0.65	-0.2
1,519,996	+		MIT1002_01369	0.70	-0.7
1,520,019	+		MIT1002_01369	0.72	+1.4
1,520,019	+		MIT1002_01369	0.72	+0.7
1,520,019	+		MIT1002_01369	0.72	+0.5
1,520,019	+		MIT1002_01369	0.72	-0.3
1,520,019	+		MIT1002_01369	0.72	-1.2
1,520,027	-		MIT1002_01369	0.73	+0.6
1,520,027	-		MIT1002_01369	0.73	-1.5
1,520,027	-		MIT1002_01369	0.73	-2.4
1,520,027	-		MIT1002_01369	0.73	-0.7
1,520,045	+		MIT1002_01369	0.74	-0.2
1,520,069	-		MIT1002_01369	0.76	+0.1
1,520,113	-		MIT1002_01369	0.80	+1.1