Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01291

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
1,428,628	-		MIT1002_01290	0.84	+0.4
1,428,673	-		MIT1002_01290	0.85	-1.4
1,428,673	-		MIT1002_01290	0.85	-0.0
1,428,696	+		MIT1002_01290	0.86	+0.1
1,428,727	+		MIT1002_01290	0.86	-0.6
1,428,727	+		MIT1002_01290	0.86	+1.6
1,428,727	+		MIT1002_01290	0.86	+0.9
1,428,735	-		MIT1002_01290	0.87	+1.0
1,428,735	-		MIT1002_01290	0.87	+0.6
1,428,745	-		MIT1002_01290	0.87	+0.3
1,429,022	-				+0.0
1,429,161	-				+0.3
1,429,177	+				+0.5
1,429,199	+				-0.2
1,429,199	+				-0.1
1,429,199	+				+1.2
1,429,199	+				+1.1
1,429,199	+				+1.1
1,429,199	+				-0.6
1,429,199	+				+0.7
1,429,199	+				-2.1
1,429,207	-				-0.4
1,429,207	-				+0.3
1,429,207	-				+0.5
1,429,207	-				-1.3
1,429,207	-				-0.0
1,429,207	-				+2.4
1,429,346	+				-1.2
1,429,348	+				-3.7
1,429,356	+				+1.0
1,429,356	+				+0.5
1,429,356	-				+0.7
1,429,357	-				+0.9
1,429,369	-				-0.5
1,429,571	+				-0.0
1,429,664	+				+2.0
1,429,680	+				+1.0
1,429,685	+				+0.3
1,429,723	-				+2.7
1,429,733	+				+2.8
1,429,831	+				+2.7
1,429,954	+		MIT1002_01291	0.14	+1.7
1,429,954	+		MIT1002_01291	0.14	+2.0
1,429,954	+		MIT1002_01291	0.14	+1.2
1,430,035	-		MIT1002_01291	0.17	+1.3
1,430,125	+		MIT1002_01291	0.20	+2.0
1,430,185	-		MIT1002_01291	0.22	+1.2
1,430,205	+		MIT1002_01291	0.23	+1.5
1,430,215	+		MIT1002_01291	0.23	-0.1
1,430,215	+		MIT1002_01291	0.23	+0.8
1,430,215	+		MIT1002_01291	0.23	+3.1
1,430,413	-		MIT1002_01291	0.31	+0.4
1,430,532	-		MIT1002_01291	0.35	+0.6
1,430,620	+		MIT1002_01291	0.38	-0.4
1,430,654	+		MIT1002_01291	0.39	+2.0
1,430,734	+		MIT1002_01291	0.42	+0.5
1,430,750	-		MIT1002_01291	0.43	+1.1
1,430,750	-		MIT1002_01291	0.43	-1.8
1,430,823	+		MIT1002_01291	0.45	+0.8
1,430,866	-		MIT1002_01291	0.47	+1.4
1,430,887	+		MIT1002_01291	0.48	+2.9
1,430,895	-		MIT1002_01291	0.48	+1.1
1,430,916	+		MIT1002_01291	0.49	+1.1
1,431,010	-		MIT1002_01291	0.52	+1.9
1,431,021	+		MIT1002_01291	0.53	+1.0
1,431,127	+		MIT1002_01291	0.57	+0.4
1,431,146	+		MIT1002_01291	0.57	+0.2
1,431,181	+		MIT1002_01291	0.58	+2.2
1,431,216	-		MIT1002_01291	0.60	+1.1
1,431,227	+		MIT1002_01291	0.60	+2.4
1,431,298	+		MIT1002_01291	0.63	+0.7
1,431,328	-		MIT1002_01291	0.64	+2.5
1,431,340	+		MIT1002_01291	0.64	+3.4
1,431,340	+		MIT1002_01291	0.64	+1.6
1,431,340	+		MIT1002_01291	0.64	+1.5
1,431,348	-		MIT1002_01291	0.65	+1.9
1,431,355	+		MIT1002_01291	0.65	+0.1
1,431,429	-		MIT1002_01291	0.68	+0.9
1,431,472	-		MIT1002_01291	0.69	+1.4
1,431,642	-		MIT1002_01291	0.75	+2.0
1,431,646	+		MIT1002_01291	0.75	-0.5
1,431,711	+		MIT1002_01291	0.78	+0.9
1,431,746	+		MIT1002_01291	0.79	+1.0
1,431,752	-		MIT1002_01291	0.79	+3.4
1,431,842	+		MIT1002_01291	0.83	+3.4
1,432,036	+		MIT1002_01291	0.90	+1.0
1,432,051	+				+2.4
1,432,112	+				+1.8
1,432,162	+				+1.5
1,432,163	+				-1.4
1,432,171	-				+0.6
1,432,171	-				-0.1
1,432,171	-				+1.4
1,432,354	+				+1.0
1,432,363	+				+0.3
1,432,415	+				+1.7
1,432,430	-				+2.1
1,432,430	-				-0.0
1,432,471	+				-2.4
1,432,479	-				-2.1
1,432,479	-				-0.9
1,432,507	-				-1.3
1,432,592	+		MIT1002_01292	0.21	-2.5
1,432,592	+		MIT1002_01292	0.21	-3.0
1,432,617	-		MIT1002_01292	0.26	+0.4
1,432,617	-		MIT1002_01292	0.26	+0.4
1,432,673	+		MIT1002_01292	0.36	-3.2
1,432,682	+		MIT1002_01292	0.38	-2.9
1,432,712	-		MIT1002_01292	0.44	-3.2
1,432,784	-		MIT1002_01292	0.57	-1.3
1,432,784	-		MIT1002_01292	0.57	-3.4
1,432,808	+		MIT1002_01292	0.62	-1.8
1,432,884	-		MIT1002_01292	0.76	-2.2
1,432,890	+		MIT1002_01292	0.77	-1.3
1,432,908	-		MIT1002_01292	0.81	-2.5
1,432,969	+				-2.2
1,432,995	+				+0.2
1,433,003	-				-0.9
1,433,089	+				-1.3
1,433,164	-		MIT1002_01293	0.17	+0.6
1,433,164	-		MIT1002_01293	0.17	+0.6
1,433,280	-		MIT1002_01293	0.77	-0.2
1,433,290	-		MIT1002_01293	0.82	-0.1
1,433,290	-		MIT1002_01293	0.82	+0.1