Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00969

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
1,074,357	+		MIT1002_00968	0.28	-1.8
1,074,519	+		MIT1002_00968	0.40	-0.7
1,074,577	+		MIT1002_00968	0.45	-3.1
1,074,709	+		MIT1002_00968	0.55	-2.2
1,074,726	+		MIT1002_00968	0.56	+1.8
1,074,811	+		MIT1002_00968	0.63	-0.7
1,074,819	-		MIT1002_00968	0.63	+1.0
1,074,821	-		MIT1002_00968	0.63	-2.3
1,074,849	-		MIT1002_00968	0.66	+0.8
1,074,988	+		MIT1002_00968	0.76	+0.2
1,075,001	-		MIT1002_00968	0.77	-0.8
1,075,039	+		MIT1002_00968	0.80	-0.6
1,075,053	+		MIT1002_00968	0.81	+0.1
1,075,149	-		MIT1002_00968	0.88	+0.6
1,075,166	-		MIT1002_00968	0.90	+1.0
1,075,176	+				+1.5
1,075,176	+				+0.5
1,075,184	-				+1.0
1,075,231	-				+3.6
1,075,245	+				+3.4
1,075,253	-				+1.0
1,075,253	-				+2.1
1,075,311	+				+1.4
1,075,319	-				+2.1
1,075,319	-				+1.0
1,075,338	-				+1.4
1,075,349	+				-0.6
1,075,447	-		MIT1002_00969	0.15	+1.2
1,075,448	+		MIT1002_00969	0.15	+0.9
1,075,448	+		MIT1002_00969	0.15	+3.4
1,075,456	-		MIT1002_00969	0.16	+1.3
1,075,456	-		MIT1002_00969	0.16	+0.9
1,075,456	-		MIT1002_00969	0.16	-1.5
1,075,456	-		MIT1002_00969	0.16	+1.1
1,075,456	-		MIT1002_00969	0.16	+0.3
1,075,511	+		MIT1002_00969	0.22	+1.4
1,075,518	-		MIT1002_00969	0.23	+1.7
1,075,524	+		MIT1002_00969	0.23	+1.4
1,075,554	+		MIT1002_00969	0.27	+0.3
1,075,562	-		MIT1002_00969	0.27	+0.1
1,075,573	+		MIT1002_00969	0.29	+0.2
1,075,595	+		MIT1002_00969	0.31	+1.0
1,075,595	+		MIT1002_00969	0.31	+0.8
1,075,595	+		MIT1002_00969	0.31	+0.6
1,075,603	-		MIT1002_00969	0.32	+2.2
1,075,603	-		MIT1002_00969	0.32	-1.1
1,075,683	+		MIT1002_00969	0.40	+1.1
1,075,745	-		MIT1002_00969	0.47	+0.1
1,075,752	+		MIT1002_00969	0.48	+1.3
1,075,889	+		MIT1002_00969	0.62	-0.9
1,075,969	-		MIT1002_00969	0.70	-0.4
1,076,432	+				+1.0
1,076,432	+				-0.6
1,076,440	-				+0.4
1,076,487	-				-1.4
1,076,545	+		MIT1002_00970	0.12	-0.3
1,076,553	-		MIT1002_00970	0.12	-3.4
1,076,553	-		MIT1002_00970	0.12	-1.5
1,076,587	-		MIT1002_00970	0.16	-1.7
1,076,587	-		MIT1002_00970	0.16	-1.0
1,076,592	+		MIT1002_00970	0.16	-0.4
1,076,592	-		MIT1002_00970	0.16	-4.3
1,076,644	+		MIT1002_00970	0.21	-2.1
1,076,649	+		MIT1002_00970	0.22	-1.5
1,076,649	+		MIT1002_00970	0.22	-1.3
1,076,649	+		MIT1002_00970	0.22	-0.3
1,076,652	-		MIT1002_00970	0.22	-1.7
1,076,652	-		MIT1002_00970	0.22	-2.6
1,076,656	+		MIT1002_00970	0.22	-3.8
1,076,657	-		MIT1002_00970	0.22	-2.3
1,076,657	-		MIT1002_00970	0.22	-1.0
1,076,657	-		MIT1002_00970	0.22	-1.8
1,076,657	-		MIT1002_00970	0.22	-2.5
1,076,657	-		MIT1002_00970	0.22	-2.8
1,076,657	-		MIT1002_00970	0.22	-2.3
1,076,657	-		MIT1002_00970	0.22	-3.8
1,076,657	-		MIT1002_00970	0.22	-0.6
1,076,715	+		MIT1002_00970	0.28	-1.5
1,076,759	+		MIT1002_00970	0.32	-2.1
1,076,815	-		MIT1002_00970	0.38	+0.6
1,076,815	-		MIT1002_00970	0.38	-4.2
1,076,843	+		MIT1002_00970	0.41	-3.1
1,076,844	-		MIT1002_00970	0.41	-0.8
1,076,851	-		MIT1002_00970	0.41	-1.7
1,076,851	-		MIT1002_00970	0.41	-3.3
1,076,853	+		MIT1002_00970	0.42	-2.6
1,076,908	+		MIT1002_00970	0.47	-1.4
1,076,942	-		MIT1002_00970	0.50	-1.7
1,076,953	+		MIT1002_00970	0.51	-0.8
1,076,988	-		MIT1002_00970	0.55	-2.4
1,077,006	-		MIT1002_00970	0.57	-2.4
1,077,006	-		MIT1002_00970	0.57	-3.7
1,077,084	+		MIT1002_00970	0.64	-3.0
1,077,087	-		MIT1002_00970	0.65	-1.1
1,077,118	+		MIT1002_00970	0.68	-2.9
1,077,118	+		MIT1002_00970	0.68	-0.8
1,077,118	+		MIT1002_00970	0.68	-4.3
1,077,126	-		MIT1002_00970	0.68	-1.6
1,077,126	-		MIT1002_00970	0.68	-0.3
1,077,126	-		MIT1002_00970	0.68	-3.2
1,077,136	-		MIT1002_00970	0.69	-0.6
1,077,147	-		MIT1002_00970	0.70	-3.5
1,077,167	-		MIT1002_00970	0.72	-3.1
1,077,194	+		MIT1002_00970	0.75	-3.7