Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00868 and MIT1002_00869 are separated by 106 nucleotides MIT1002_00869 and MIT1002_00870 are separated by 228 nucleotides
MIT1002_00868: MIT1002_00868 - Toluene efflux pump outer membrane protein TtgF precursor, at 955,913 to 957,391
_00868
MIT1002_00869: MIT1002_00869 - hypothetical protein, at 957,498 to 957,953
_00869
MIT1002_00870: MIT1002_00870 - Prolyl tripeptidyl peptidase precursor, at 958,182 to 960,308
_00870
Position (kb) 957
958 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 956.503 kb on + strand, within MIT1002_00868 at 956.523 kb on + strand, within MIT1002_00868 at 956.583 kb on + strand, within MIT1002_00868 at 956.584 kb on + strand, within MIT1002_00868 at 956.584 kb on + strand, within MIT1002_00868 at 956.592 kb on - strand, within MIT1002_00868 at 956.609 kb on - strand, within MIT1002_00868 at 956.727 kb on + strand, within MIT1002_00868 at 956.751 kb on + strand, within MIT1002_00868 at 956.759 kb on - strand, within MIT1002_00868 at 956.780 kb on - strand, within MIT1002_00868 at 956.788 kb on - strand, within MIT1002_00868 at 956.788 kb on - strand, within MIT1002_00868 at 956.788 kb on - strand, within MIT1002_00868 at 956.793 kb on - strand, within MIT1002_00868 at 956.805 kb on - strand, within MIT1002_00868 at 956.816 kb on + strand, within MIT1002_00868 at 956.816 kb on + strand, within MIT1002_00868 at 956.816 kb on + strand, within MIT1002_00868 at 956.816 kb on + strand, within MIT1002_00868 at 956.816 kb on + strand, within MIT1002_00868 at 956.824 kb on - strand, within MIT1002_00868 at 956.824 kb on - strand, within MIT1002_00868 at 956.831 kb on + strand, within MIT1002_00868 at 956.831 kb on - strand, within MIT1002_00868 at 956.957 kb on + strand, within MIT1002_00868 at 956.965 kb on - strand, within MIT1002_00868 at 956.965 kb on - strand, within MIT1002_00868 at 956.984 kb on - strand, within MIT1002_00868 at 957.040 kb on + strand, within MIT1002_00868 at 957.048 kb on - strand, within MIT1002_00868 at 957.286 kb on + strand at 957.302 kb on - strand at 957.313 kb on + strand at 957.480 kb on + strand at 957.481 kb on - strand at 957.650 kb on + strand, within MIT1002_00869 at 957.662 kb on + strand, within MIT1002_00869 at 957.786 kb on + strand, within MIT1002_00869 at 957.799 kb on + strand, within MIT1002_00869 at 957.837 kb on + strand, within MIT1002_00869 at 957.897 kb on - strand, within MIT1002_00869 at 957.956 kb on + strand at 957.957 kb on + strand at 957.975 kb on + strand at 957.976 kb on - strand at 958.028 kb on + strand at 958.028 kb on + strand at 958.028 kb on + strand at 958.028 kb on + strand at 958.031 kb on + strand at 958.036 kb on - strand at 958.036 kb on - strand at 958.036 kb on - strand at 958.036 kb on - strand at 958.075 kb on - strand at 958.242 kb on + strand at 958.250 kb on - strand at 958.255 kb on - strand at 958.292 kb on + strand at 958.372 kb on + strand at 958.372 kb on + strand at 958.382 kb on - strand at 958.382 kb on - strand at 958.425 kb on - strand, within MIT1002_00870 at 958.454 kb on + strand, within MIT1002_00870 at 958.541 kb on + strand, within MIT1002_00870 at 958.589 kb on - strand, within MIT1002_00870 at 958.647 kb on - strand, within MIT1002_00870 at 958.830 kb on + strand, within MIT1002_00870
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5 remove 956,503 + MIT1002_00868 0.40 -2.4 956,523 + MIT1002_00868 0.41 -0.3 956,583 + MIT1002_00868 0.45 +0.4 956,584 + MIT1002_00868 0.45 -3.1 956,584 + MIT1002_00868 0.45 -0.6 956,592 - MIT1002_00868 0.46 -2.6 956,609 - MIT1002_00868 0.47 +1.0 956,727 + MIT1002_00868 0.55 +0.1 956,751 + MIT1002_00868 0.57 -0.0 956,759 - MIT1002_00868 0.57 +0.7 956,780 - MIT1002_00868 0.59 -2.1 956,788 - MIT1002_00868 0.59 -0.7 956,788 - MIT1002_00868 0.59 +1.4 956,788 - MIT1002_00868 0.59 +0.4 956,793 - MIT1002_00868 0.59 -1.9 956,805 - MIT1002_00868 0.60 +1.6 956,816 + MIT1002_00868 0.61 -2.1 956,816 + MIT1002_00868 0.61 +0.1 956,816 + MIT1002_00868 0.61 +1.7 956,816 + MIT1002_00868 0.61 -0.1 956,816 + MIT1002_00868 0.61 +0.6 956,824 - MIT1002_00868 0.62 -0.4 956,824 - MIT1002_00868 0.62 -1.7 956,831 + MIT1002_00868 0.62 -1.0 956,831 - MIT1002_00868 0.62 -0.3 956,957 + MIT1002_00868 0.71 -0.0 956,965 - MIT1002_00868 0.71 -1.9 956,965 - MIT1002_00868 0.71 -0.1 956,984 - MIT1002_00868 0.72 -0.6 957,040 + MIT1002_00868 0.76 +0.7 957,048 - MIT1002_00868 0.77 -0.6 957,286 + -0.8 957,302 - -2.2 957,313 + +0.7 957,480 + -1.2 957,481 - +0.4 957,650 + MIT1002_00869 0.33 -1.1 957,662 + MIT1002_00869 0.36 +0.4 957,786 + MIT1002_00869 0.63 +1.2 957,799 + MIT1002_00869 0.66 +2.1 957,837 + MIT1002_00869 0.74 +0.1 957,897 - MIT1002_00869 0.88 +1.6 957,956 + -2.3 957,957 + +1.7 957,975 + +4.1 957,976 - +0.3 958,028 + -1.9 958,028 + -0.6 958,028 + -0.9 958,028 + -0.4 958,031 + +2.7 958,036 - -1.0 958,036 - +1.0 958,036 - -0.6 958,036 - +1.1 958,075 - +0.8 958,242 + -0.0 958,250 - +1.3 958,255 - -0.6 958,292 + +0.8 958,372 + -1.0 958,372 + +1.0 958,382 - +0.1 958,382 - +0.5 958,425 - MIT1002_00870 0.11 -1.1 958,454 + MIT1002_00870 0.13 -0.7 958,541 + MIT1002_00870 0.17 +1.1 958,589 - MIT1002_00870 0.19 +0.3 958,647 - MIT1002_00870 0.22 +1.9 958,830 + MIT1002_00870 0.30 +0.2
Or see this region's nucleotide sequence