Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00835 and MIT1002_00836 are separated by 9 nucleotides MIT1002_00836 and MIT1002_00837 are separated by 118 nucleotides MIT1002_00837 and MIT1002_00838 overlap by 4 nucleotides MIT1002_00838 and MIT1002_00839 are separated by 29 nucleotides MIT1002_00839 and MIT1002_00840 are separated by 12 nucleotides
MIT1002_00835: MIT1002_00835 - putative phospholipid ABC transporter permease protein MlaE, at 917,280 to 918,056
_00835
MIT1002_00836: MIT1002_00836 - putative phospholipid ABC transporter-binding protein MlaD, at 918,066 to 918,539
_00836
MIT1002_00837: MIT1002_00837 - putative phospholipid-binding protein MlaC precursor, at 918,658 to 919,323
_00837
MIT1002_00838: MIT1002_00838 - Putative anti-sigma factor antagonist, at 919,320 to 919,628
_00838
MIT1002_00839: MIT1002_00839 - transcriptional regulator BolA, at 919,658 to 919,915
_00839
MIT1002_00840: MIT1002_00840 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 919,928 to 921,190
_00840
Position (kb) 918
919
920 Strain fitness (log2 ratio) -1
0
1
2 at 917.662 kb on - strand, within MIT1002_00835 at 917.743 kb on - strand, within MIT1002_00835 at 917.779 kb on + strand, within MIT1002_00835 at 917.861 kb on + strand, within MIT1002_00835 at 917.873 kb on - strand, within MIT1002_00835 at 917.873 kb on - strand, within MIT1002_00835 at 917.958 kb on + strand, within MIT1002_00835 at 918.006 kb on + strand at 918.058 kb on + strand at 918.292 kb on - strand, within MIT1002_00836 at 918.438 kb on + strand, within MIT1002_00836 at 918.477 kb on + strand, within MIT1002_00836 at 918.553 kb on - strand at 918.560 kb on + strand at 918.776 kb on + strand, within MIT1002_00837 at 918.898 kb on + strand, within MIT1002_00837 at 918.920 kb on + strand, within MIT1002_00837 at 918.984 kb on + strand, within MIT1002_00837 at 919.052 kb on + strand, within MIT1002_00837 at 919.364 kb on + strand, within MIT1002_00838 at 919.494 kb on + strand, within MIT1002_00838 at 919.577 kb on + strand, within MIT1002_00838
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5 remove 917,662 - MIT1002_00835 0.49 +1.3 917,743 - MIT1002_00835 0.60 +1.3 917,779 + MIT1002_00835 0.64 -0.3 917,861 + MIT1002_00835 0.75 +2.1 917,873 - MIT1002_00835 0.76 +1.6 917,873 - MIT1002_00835 0.76 +2.0 917,958 + MIT1002_00835 0.87 +1.2 918,006 + +1.2 918,058 + +2.5 918,292 - MIT1002_00836 0.48 +1.4 918,438 + MIT1002_00836 0.78 +1.1 918,477 + MIT1002_00836 0.87 +0.1 918,553 - +0.5 918,560 + -0.2 918,776 + MIT1002_00837 0.18 -1.5 918,898 + MIT1002_00837 0.36 +1.3 918,920 + MIT1002_00837 0.39 +0.6 918,984 + MIT1002_00837 0.49 +1.3 919,052 + MIT1002_00837 0.59 +0.3 919,364 + MIT1002_00838 0.14 +1.6 919,494 + MIT1002_00838 0.56 +1.4 919,577 + MIT1002_00838 0.83 -0.2
Or see this region's nucleotide sequence