Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00703 and MIT1002_00704 overlap by 62 nucleotides MIT1002_00704 and MIT1002_00705 are separated by 33 nucleotides MIT1002_00705 and MIT1002_00706 are separated by 4 nucleotides MIT1002_00706 and MIT1002_00707 are separated by 282 nucleotides
MIT1002_00703: MIT1002_00703 - hypothetical protein, at 770,965 to 771,612
_00703
MIT1002_00704: MIT1002_00704 - hypothetical protein, at 771,551 to 771,889
_00704
MIT1002_00705: MIT1002_00705 - Trifunctional nucleotide phosphoesterase protein YfkN precursor, at 771,923 to 772,483
_00705
MIT1002_00706: MIT1002_00706 - Bacteriophytochrome cph2, at 772,488 to 774,086
_00706
MIT1002_00707: MIT1002_00707 - Chemotaxis regulator BdlA, at 774,369 to 775,685
_00707
Position (kb) 772
773
774
775 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 771.583 kb on + strand at 771.583 kb on + strand at 771.588 kb on + strand at 771.596 kb on - strand at 771.596 kb on - strand at 771.670 kb on - strand, within MIT1002_00704 at 771.681 kb on - strand, within MIT1002_00704 at 771.708 kb on + strand, within MIT1002_00704 at 771.732 kb on - strand, within MIT1002_00704 at 771.803 kb on + strand, within MIT1002_00704 at 771.844 kb on + strand, within MIT1002_00704 at 771.844 kb on + strand, within MIT1002_00704 at 771.928 kb on - strand at 771.937 kb on + strand at 771.974 kb on - strand at 772.022 kb on - strand, within MIT1002_00705 at 772.116 kb on - strand, within MIT1002_00705 at 772.137 kb on - strand, within MIT1002_00705 at 772.195 kb on + strand, within MIT1002_00705 at 772.209 kb on - strand, within MIT1002_00705 at 772.209 kb on - strand, within MIT1002_00705 at 772.255 kb on + strand, within MIT1002_00705 at 772.340 kb on - strand, within MIT1002_00705 at 772.340 kb on - strand, within MIT1002_00705 at 772.367 kb on + strand, within MIT1002_00705 at 772.438 kb on + strand at 772.530 kb on - strand at 772.629 kb on + strand at 772.761 kb on - strand, within MIT1002_00706 at 772.800 kb on + strand, within MIT1002_00706 at 772.813 kb on - strand, within MIT1002_00706 at 772.906 kb on + strand, within MIT1002_00706 at 772.906 kb on + strand, within MIT1002_00706 at 772.914 kb on - strand, within MIT1002_00706 at 772.954 kb on - strand, within MIT1002_00706 at 773.027 kb on + strand, within MIT1002_00706 at 773.050 kb on + strand, within MIT1002_00706 at 773.050 kb on + strand, within MIT1002_00706 at 773.057 kb on + strand, within MIT1002_00706 at 773.062 kb on + strand, within MIT1002_00706 at 773.070 kb on - strand, within MIT1002_00706 at 773.070 kb on - strand, within MIT1002_00706 at 773.070 kb on - strand, within MIT1002_00706 at 773.070 kb on - strand, within MIT1002_00706 at 773.134 kb on - strand, within MIT1002_00706 at 773.142 kb on - strand, within MIT1002_00706 at 773.206 kb on + strand, within MIT1002_00706 at 773.214 kb on - strand, within MIT1002_00706 at 773.275 kb on - strand, within MIT1002_00706 at 773.294 kb on + strand, within MIT1002_00706 at 773.314 kb on + strand, within MIT1002_00706 at 773.343 kb on + strand, within MIT1002_00706 at 773.516 kb on - strand, within MIT1002_00706 at 773.516 kb on - strand, within MIT1002_00706 at 773.516 kb on - strand, within MIT1002_00706 at 773.516 kb on - strand, within MIT1002_00706 at 773.523 kb on - strand, within MIT1002_00706 at 773.561 kb on - strand, within MIT1002_00706 at 773.633 kb on + strand, within MIT1002_00706 at 773.641 kb on - strand, within MIT1002_00706 at 773.641 kb on - strand, within MIT1002_00706 at 773.714 kb on + strand, within MIT1002_00706 at 773.726 kb on + strand, within MIT1002_00706 at 773.726 kb on + strand, within MIT1002_00706 at 773.726 kb on + strand, within MIT1002_00706 at 773.726 kb on + strand, within MIT1002_00706 at 773.726 kb on + strand, within MIT1002_00706 at 773.726 kb on + strand, within MIT1002_00706 at 773.734 kb on - strand, within MIT1002_00706 at 773.734 kb on - strand, within MIT1002_00706 at 773.734 kb on - strand, within MIT1002_00706 at 773.734 kb on - strand, within MIT1002_00706 at 773.734 kb on - strand, within MIT1002_00706 at 773.734 kb on - strand, within MIT1002_00706 at 773.744 kb on + strand, within MIT1002_00706 at 773.783 kb on + strand, within MIT1002_00706 at 773.814 kb on + strand, within MIT1002_00706 at 773.814 kb on + strand, within MIT1002_00706 at 773.820 kb on - strand, within MIT1002_00706 at 773.822 kb on - strand, within MIT1002_00706 at 773.822 kb on - strand, within MIT1002_00706 at 773.872 kb on - strand, within MIT1002_00706 at 773.913 kb on - strand, within MIT1002_00706 at 773.923 kb on - strand, within MIT1002_00706 at 773.949 kb on + strand at 774.008 kb on + strand at 774.008 kb on + strand at 774.008 kb on + strand at 774.028 kb on - strand at 774.035 kb on - strand at 774.035 kb on - strand at 774.113 kb on + strand at 774.213 kb on - strand at 774.440 kb on + strand at 774.445 kb on + strand at 774.473 kb on - strand at 774.609 kb on + strand, within MIT1002_00707 at 774.663 kb on + strand, within MIT1002_00707 at 774.703 kb on + strand, within MIT1002_00707 at 774.790 kb on + strand, within MIT1002_00707 at 774.903 kb on - strand, within MIT1002_00707 at 774.941 kb on + strand, within MIT1002_00707 at 774.949 kb on - strand, within MIT1002_00707 at 774.949 kb on - strand, within MIT1002_00707 at 774.959 kb on - strand, within MIT1002_00707 at 774.959 kb on - strand, within MIT1002_00707 at 774.994 kb on + strand, within MIT1002_00707 at 775.010 kb on + strand, within MIT1002_00707 at 775.033 kb on - strand, within MIT1002_00707 at 775.056 kb on - strand, within MIT1002_00707 at 775.063 kb on - strand, within MIT1002_00707 at 775.068 kb on - strand, within MIT1002_00707 at 775.073 kb on + strand, within MIT1002_00707 at 775.081 kb on - strand, within MIT1002_00707
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5 remove 771,583 + +0.1 771,583 + +0.1 771,588 + -1.6 771,596 - +0.8 771,596 - -0.2 771,670 - MIT1002_00704 0.35 +0.1 771,681 - MIT1002_00704 0.38 +1.1 771,708 + MIT1002_00704 0.46 +0.1 771,732 - MIT1002_00704 0.53 -1.7 771,803 + MIT1002_00704 0.74 +0.6 771,844 + MIT1002_00704 0.86 +1.0 771,844 + MIT1002_00704 0.86 +0.3 771,928 - -0.9 771,937 + -1.5 771,974 - -0.4 772,022 - MIT1002_00705 0.18 -0.4 772,116 - MIT1002_00705 0.34 -0.1 772,137 - MIT1002_00705 0.38 -1.7 772,195 + MIT1002_00705 0.48 +0.9 772,209 - MIT1002_00705 0.51 +1.2 772,209 - MIT1002_00705 0.51 -2.0 772,255 + MIT1002_00705 0.59 +2.2 772,340 - MIT1002_00705 0.74 +0.0 772,340 - MIT1002_00705 0.74 -0.2 772,367 + MIT1002_00705 0.79 -0.4 772,438 + -0.2 772,530 - +1.0 772,629 + +0.9 772,761 - MIT1002_00706 0.17 +2.3 772,800 + MIT1002_00706 0.20 -0.5 772,813 - MIT1002_00706 0.20 +1.6 772,906 + MIT1002_00706 0.26 -0.9 772,906 + MIT1002_00706 0.26 -0.3 772,914 - MIT1002_00706 0.27 -0.3 772,954 - MIT1002_00706 0.29 +0.2 773,027 + MIT1002_00706 0.34 -0.4 773,050 + MIT1002_00706 0.35 -1.6 773,050 + MIT1002_00706 0.35 -0.2 773,057 + MIT1002_00706 0.36 +0.9 773,062 + MIT1002_00706 0.36 -0.0 773,070 - MIT1002_00706 0.36 -0.5 773,070 - MIT1002_00706 0.36 +0.6 773,070 - MIT1002_00706 0.36 -1.5 773,070 - MIT1002_00706 0.36 +0.7 773,134 - MIT1002_00706 0.40 +0.4 773,142 - MIT1002_00706 0.41 +1.4 773,206 + MIT1002_00706 0.45 -0.0 773,214 - MIT1002_00706 0.45 -2.0 773,275 - MIT1002_00706 0.49 -0.0 773,294 + MIT1002_00706 0.50 +0.1 773,314 + MIT1002_00706 0.52 -2.9 773,343 + MIT1002_00706 0.53 -0.1 773,516 - MIT1002_00706 0.64 +0.1 773,516 - MIT1002_00706 0.64 +0.5 773,516 - MIT1002_00706 0.64 -0.4 773,516 - MIT1002_00706 0.64 +0.0 773,523 - MIT1002_00706 0.65 +0.1 773,561 - MIT1002_00706 0.67 -1.5 773,633 + MIT1002_00706 0.72 -0.4 773,641 - MIT1002_00706 0.72 -0.2 773,641 - MIT1002_00706 0.72 +1.0 773,714 + MIT1002_00706 0.77 -0.4 773,726 + MIT1002_00706 0.77 -1.6 773,726 + MIT1002_00706 0.77 +1.0 773,726 + MIT1002_00706 0.77 +0.2 773,726 + MIT1002_00706 0.77 +0.2 773,726 + MIT1002_00706 0.77 +1.5 773,726 + MIT1002_00706 0.77 -1.2 773,734 - MIT1002_00706 0.78 +0.8 773,734 - MIT1002_00706 0.78 -0.1 773,734 - MIT1002_00706 0.78 -2.2 773,734 - MIT1002_00706 0.78 +1.3 773,734 - MIT1002_00706 0.78 -0.8 773,734 - MIT1002_00706 0.78 -0.2 773,744 + MIT1002_00706 0.79 -0.2 773,783 + MIT1002_00706 0.81 +0.2 773,814 + MIT1002_00706 0.83 -0.7 773,814 + MIT1002_00706 0.83 -1.4 773,820 - MIT1002_00706 0.83 -1.8 773,822 - MIT1002_00706 0.83 -0.2 773,822 - MIT1002_00706 0.83 +0.3 773,872 - MIT1002_00706 0.87 -1.0 773,913 - MIT1002_00706 0.89 -0.0 773,923 - MIT1002_00706 0.90 -0.3 773,949 + +0.2 774,008 + -0.5 774,008 + -2.1 774,008 + +2.0 774,028 - -2.2 774,035 - -0.0 774,035 - -1.4 774,113 + +0.6 774,213 - +0.2 774,440 + -0.3 774,445 + +1.5 774,473 - -0.1 774,609 + MIT1002_00707 0.18 +0.9 774,663 + MIT1002_00707 0.22 +0.6 774,703 + MIT1002_00707 0.25 -0.1 774,790 + MIT1002_00707 0.32 +0.6 774,903 - MIT1002_00707 0.41 -0.2 774,941 + MIT1002_00707 0.43 -0.1 774,949 - MIT1002_00707 0.44 +2.0 774,949 - MIT1002_00707 0.44 +0.2 774,959 - MIT1002_00707 0.45 +0.2 774,959 - MIT1002_00707 0.45 -0.1 774,994 + MIT1002_00707 0.47 -0.4 775,010 + MIT1002_00707 0.49 +0.7 775,033 - MIT1002_00707 0.50 +1.4 775,056 - MIT1002_00707 0.52 +0.1 775,063 - MIT1002_00707 0.53 +1.2 775,068 - MIT1002_00707 0.53 +0.8 775,073 + MIT1002_00707 0.53 -0.3 775,081 - MIT1002_00707 0.54 -2.5
Or see this region's nucleotide sequence