Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00696 and MIT1002_00697 are separated by 399 nucleotides MIT1002_00697 and MIT1002_00698 are separated by 311 nucleotides
MIT1002_00696: MIT1002_00696 - Transposase IS116/IS110/IS902 family protein, at 759,598 to 760,623
_00696
MIT1002_00697: MIT1002_00697 - Bicarbonate transporter BicA, at 761,023 to 762,588
_00697
MIT1002_00698: MIT1002_00698 - Nitrite reductase [NAD(P)H], at 762,900 to 765,449
_00698
Position (kb) 761
762
763 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 760.910 kb on + strand at 760.912 kb on + strand at 760.972 kb on + strand at 760.972 kb on + strand at 761.086 kb on - strand at 761.135 kb on + strand at 761.263 kb on + strand, within MIT1002_00697 at 761.440 kb on - strand, within MIT1002_00697 at 761.441 kb on - strand, within MIT1002_00697 at 761.464 kb on - strand, within MIT1002_00697 at 761.466 kb on - strand, within MIT1002_00697 at 761.482 kb on + strand, within MIT1002_00697 at 761.606 kb on + strand, within MIT1002_00697 at 761.606 kb on + strand, within MIT1002_00697 at 761.606 kb on + strand, within MIT1002_00697 at 761.606 kb on + strand, within MIT1002_00697 at 761.606 kb on + strand, within MIT1002_00697 at 761.614 kb on - strand, within MIT1002_00697 at 761.614 kb on - strand, within MIT1002_00697 at 761.614 kb on - strand, within MIT1002_00697 at 761.629 kb on + strand, within MIT1002_00697 at 761.657 kb on + strand, within MIT1002_00697 at 761.657 kb on + strand, within MIT1002_00697 at 761.665 kb on - strand, within MIT1002_00697 at 761.675 kb on - strand, within MIT1002_00697 at 761.688 kb on - strand, within MIT1002_00697 at 761.722 kb on + strand, within MIT1002_00697 at 761.791 kb on - strand, within MIT1002_00697 at 761.863 kb on + strand, within MIT1002_00697 at 761.871 kb on - strand, within MIT1002_00697 at 761.871 kb on - strand, within MIT1002_00697 at 761.871 kb on - strand, within MIT1002_00697 at 761.912 kb on + strand, within MIT1002_00697 at 761.956 kb on + strand, within MIT1002_00697 at 761.970 kb on - strand, within MIT1002_00697 at 762.064 kb on + strand, within MIT1002_00697 at 762.075 kb on + strand, within MIT1002_00697 at 762.201 kb on - strand, within MIT1002_00697 at 762.203 kb on + strand, within MIT1002_00697 at 762.203 kb on + strand, within MIT1002_00697 at 762.203 kb on + strand, within MIT1002_00697 at 762.225 kb on - strand, within MIT1002_00697 at 762.289 kb on + strand, within MIT1002_00697 at 762.297 kb on - strand, within MIT1002_00697 at 762.582 kb on + strand at 762.645 kb on + strand at 762.660 kb on - strand at 762.791 kb on - strand at 762.813 kb on + strand at 762.946 kb on + strand at 763.029 kb on - strand at 763.042 kb on + strand at 763.083 kb on - strand at 763.089 kb on + strand at 763.094 kb on + strand at 763.202 kb on - strand, within MIT1002_00698 at 763.297 kb on - strand, within MIT1002_00698 at 763.360 kb on + strand, within MIT1002_00698 at 763.398 kb on + strand, within MIT1002_00698 at 763.432 kb on - strand, within MIT1002_00698 at 763.437 kb on - strand, within MIT1002_00698 at 763.450 kb on - strand, within MIT1002_00698 at 763.450 kb on - strand, within MIT1002_00698 at 763.515 kb on - strand, within MIT1002_00698 at 763.540 kb on + strand, within MIT1002_00698 at 763.548 kb on - strand, within MIT1002_00698
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5 remove 760,910 + +0.8 760,912 + -0.0 760,972 + -1.1 760,972 + +0.2 761,086 - -0.1 761,135 + +0.3 761,263 + MIT1002_00697 0.15 +0.7 761,440 - MIT1002_00697 0.27 -1.6 761,441 - MIT1002_00697 0.27 +1.7 761,464 - MIT1002_00697 0.28 -2.1 761,466 - MIT1002_00697 0.28 +1.8 761,482 + MIT1002_00697 0.29 -0.5 761,606 + MIT1002_00697 0.37 +0.4 761,606 + MIT1002_00697 0.37 -0.2 761,606 + MIT1002_00697 0.37 -1.9 761,606 + MIT1002_00697 0.37 -0.1 761,606 + MIT1002_00697 0.37 -1.5 761,614 - MIT1002_00697 0.38 -0.5 761,614 - MIT1002_00697 0.38 +0.6 761,614 - MIT1002_00697 0.38 +0.1 761,629 + MIT1002_00697 0.39 +5.3 761,657 + MIT1002_00697 0.40 +0.4 761,657 + MIT1002_00697 0.40 +0.9 761,665 - MIT1002_00697 0.41 +1.4 761,675 - MIT1002_00697 0.42 +0.2 761,688 - MIT1002_00697 0.42 +0.7 761,722 + MIT1002_00697 0.45 +2.3 761,791 - MIT1002_00697 0.49 -0.9 761,863 + MIT1002_00697 0.54 +1.0 761,871 - MIT1002_00697 0.54 -0.6 761,871 - MIT1002_00697 0.54 -1.3 761,871 - MIT1002_00697 0.54 +0.6 761,912 + MIT1002_00697 0.57 +2.6 761,956 + MIT1002_00697 0.60 +2.3 761,970 - MIT1002_00697 0.60 +1.2 762,064 + MIT1002_00697 0.66 +0.3 762,075 + MIT1002_00697 0.67 -1.3 762,201 - MIT1002_00697 0.75 -0.4 762,203 + MIT1002_00697 0.75 +1.3 762,203 + MIT1002_00697 0.75 +1.6 762,203 + MIT1002_00697 0.75 +0.3 762,225 - MIT1002_00697 0.77 +0.9 762,289 + MIT1002_00697 0.81 -1.8 762,297 - MIT1002_00697 0.81 +0.6 762,582 + +0.5 762,645 + -0.8 762,660 - -0.2 762,791 - -0.3 762,813 + +0.3 762,946 + -1.4 763,029 - -0.4 763,042 + -0.4 763,083 - +0.8 763,089 + +1.4 763,094 + +0.2 763,202 - MIT1002_00698 0.12 +2.2 763,297 - MIT1002_00698 0.16 -0.6 763,360 + MIT1002_00698 0.18 +1.0 763,398 + MIT1002_00698 0.20 -1.2 763,432 - MIT1002_00698 0.21 +0.2 763,437 - MIT1002_00698 0.21 +1.0 763,450 - MIT1002_00698 0.22 +0.6 763,450 - MIT1002_00698 0.22 -0.6 763,515 - MIT1002_00698 0.24 +0.9 763,540 + MIT1002_00698 0.25 -2.8 763,548 - MIT1002_00698 0.25 -0.6
Or see this region's nucleotide sequence