Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00681

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00678 and MIT1002_00679 are separated by 102 nucleotidesMIT1002_00679 and MIT1002_00680 are separated by 278 nucleotidesMIT1002_00680 and MIT1002_00681 are separated by 1 nucleotidesMIT1002_00681 and MIT1002_00682 are separated by 36 nucleotidesMIT1002_00682 and MIT1002_00683 are separated by 255 nucleotides MIT1002_00678: MIT1002_00678 - putative periplasmic lipoprotein, at 742,356 to 743,651 _00678 MIT1002_00679: MIT1002_00679 - hypothetical protein, at 743,754 to 744,086 _00679 MIT1002_00680: MIT1002_00680 - hypothetical protein, at 744,365 to 744,556 _00680 MIT1002_00681: MIT1002_00681 - L-lysine 2,3-aminomutase, at 744,558 to 745,583 _00681 MIT1002_00682: MIT1002_00682 - Elongation factor P, at 745,620 to 746,189 _00682 MIT1002_00683: MIT1002_00683 - Elongation factor P--(R)-beta-lysine ligase, at 746,445 to 747,518 _00683 Position (kb) 744 745 746Strain fitness (log2 ratio) -2 -1 0 1at 743.564 kb on + strandat 743.572 kb on - strandat 743.660 kb on - strandat 743.668 kb on - strandat 743.668 kb on - strandat 743.729 kb on - strandat 743.788 kb on + strand, within MIT1002_00679at 743.910 kb on - strand, within MIT1002_00679at 743.923 kb on + strand, within MIT1002_00679at 743.925 kb on + strand, within MIT1002_00679at 744.021 kb on - strand, within MIT1002_00679at 744.029 kb on + strand, within MIT1002_00679at 744.047 kb on + strand, within MIT1002_00679at 744.069 kb on - strandat 744.119 kb on + strandat 744.143 kb on - strandat 744.169 kb on - strandat 744.286 kb on + strandat 744.301 kb on - strandat 744.303 kb on + strandat 744.303 kb on + strandat 744.309 kb on - strandat 744.311 kb on - strandat 744.311 kb on - strandat 744.311 kb on - strandat 744.311 kb on - strandat 744.378 kb on + strandat 744.386 kb on - strand, within MIT1002_00680at 744.386 kb on - strand, within MIT1002_00680at 744.387 kb on + strand, within MIT1002_00680at 744.407 kb on + strand, within MIT1002_00680at 744.423 kb on + strand, within MIT1002_00680at 744.423 kb on + strand, within MIT1002_00680at 744.431 kb on - strand, within MIT1002_00680at 744.441 kb on + strand, within MIT1002_00680at 744.478 kb on + strand, within MIT1002_00680at 744.539 kb on + strandat 744.547 kb on - strandat 744.569 kb on + strandat 744.749 kb on - strand, within MIT1002_00681at 744.754 kb on + strand, within MIT1002_00681at 744.762 kb on - strand, within MIT1002_00681at 744.836 kb on + strand, within MIT1002_00681at 744.836 kb on + strand, within MIT1002_00681at 744.844 kb on - strand, within MIT1002_00681at 744.845 kb on - strand, within MIT1002_00681at 744.851 kb on + strand, within MIT1002_00681at 744.859 kb on - strand, within MIT1002_00681at 744.888 kb on + strand, within MIT1002_00681at 744.896 kb on - strand, within MIT1002_00681at 744.941 kb on - strand, within MIT1002_00681at 745.153 kb on - strand, within MIT1002_00681at 745.153 kb on - strand, within MIT1002_00681at 745.239 kb on - strand, within MIT1002_00681at 745.275 kb on + strand, within MIT1002_00681at 745.279 kb on - strand, within MIT1002_00681at 745.444 kb on + strand, within MIT1002_00681at 745.508 kb on + strandat 745.547 kb on - strandat 745.589 kb on + strandat 746.204 kb on - strandat 746.241 kb on - strandat 746.390 kb on - strandat 746.435 kb on + strandat 746.450 kb on + strandat 746.493 kb on + strandat 746.494 kb on - strandat 746.539 kb on + strandat 746.539 kb on + strandat 746.562 kb on - strand, within MIT1002_00683at 746.564 kb on + strand, within MIT1002_00683at 746.564 kb on + strand, within MIT1002_00683at 746.572 kb on - strand, within MIT1002_00683at 746.572 kb on - strand, within MIT1002_00683

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
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743,564 + +0.3
743,572 - -1.3
743,660 - +0.3
743,668 - -1.7
743,668 - -1.6
743,729 - -0.8
743,788 + MIT1002_00679 0.10 +0.7
743,910 - MIT1002_00679 0.47 -0.3
743,923 + MIT1002_00679 0.51 +1.5
743,925 + MIT1002_00679 0.51 +0.1
744,021 - MIT1002_00679 0.80 +1.3
744,029 + MIT1002_00679 0.83 +0.8
744,047 + MIT1002_00679 0.88 -1.1
744,069 - -1.7
744,119 + -0.5
744,143 - +1.1
744,169 - +1.2
744,286 + +1.1
744,301 - -1.5
744,303 + -0.1
744,303 + +0.6
744,309 - -0.3
744,311 - -1.3
744,311 - +0.3
744,311 - +1.1
744,311 - +1.7
744,378 + -0.5
744,386 - MIT1002_00680 0.11 -0.1
744,386 - MIT1002_00680 0.11 -1.6
744,387 + MIT1002_00680 0.11 +0.5
744,407 + MIT1002_00680 0.22 -0.5
744,423 + MIT1002_00680 0.30 -1.2
744,423 + MIT1002_00680 0.30 -0.3
744,431 - MIT1002_00680 0.34 -1.0
744,441 + MIT1002_00680 0.40 -0.7
744,478 + MIT1002_00680 0.59 -0.1
744,539 + +0.6
744,547 - +0.8
744,569 + -0.5
744,749 - MIT1002_00681 0.19 +0.6
744,754 + MIT1002_00681 0.19 -2.0
744,762 - MIT1002_00681 0.20 -2.1
744,836 + MIT1002_00681 0.27 -1.2
744,836 + MIT1002_00681 0.27 -1.0
744,844 - MIT1002_00681 0.28 -0.7
744,845 - MIT1002_00681 0.28 +0.6
744,851 + MIT1002_00681 0.29 +0.8
744,859 - MIT1002_00681 0.29 -0.4
744,888 + MIT1002_00681 0.32 -0.8
744,896 - MIT1002_00681 0.33 -0.7
744,941 - MIT1002_00681 0.37 -2.1
745,153 - MIT1002_00681 0.58 -2.7
745,153 - MIT1002_00681 0.58 -2.2
745,239 - MIT1002_00681 0.66 +0.6
745,275 + MIT1002_00681 0.70 -1.5
745,279 - MIT1002_00681 0.70 -2.0
745,444 + MIT1002_00681 0.86 -0.6
745,508 + +0.3
745,547 - -1.0
745,589 + -2.2
746,204 - -0.5
746,241 - +0.4
746,390 - +0.8
746,435 + +1.0
746,450 + -0.1
746,493 + -0.6
746,494 - -2.1
746,539 + +0.6
746,539 + +1.4
746,562 - MIT1002_00683 0.11 -0.2
746,564 + MIT1002_00683 0.11 -0.7
746,564 + MIT1002_00683 0.11 +0.3
746,572 - MIT1002_00683 0.12 -0.7
746,572 - MIT1002_00683 0.12 -2.3

Or see this region's nucleotide sequence