Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00670 and MIT1002_00671 are separated by 295 nucleotides MIT1002_00671 and MIT1002_00672 overlap by 52 nucleotides MIT1002_00672 and MIT1002_00673 overlap by 4 nucleotides
MIT1002_00670: MIT1002_00670 - Outer membrane protein TolC precursor, at 734,191 to 735,564
_00670
MIT1002_00671: MIT1002_00671 - ADP-ribose pyrophosphatase, at 735,860 to 736,486
_00671
MIT1002_00672: MIT1002_00672 - putative dehydrogenase, at 736,435 to 736,923
_00672
MIT1002_00673: MIT1002_00673 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, at 736,920 to 737,723
_00673
Position (kb) 735
736
737 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 734.988 kb on - strand, within MIT1002_00670 at 735.030 kb on + strand, within MIT1002_00670 at 735.394 kb on - strand, within MIT1002_00670 at 735.614 kb on - strand at 735.627 kb on + strand at 735.795 kb on + strand at 735.822 kb on + strand at 735.910 kb on + strand at 735.910 kb on + strand at 735.910 kb on + strand at 735.918 kb on - strand at 735.918 kb on - strand at 735.993 kb on - strand, within MIT1002_00671 at 736.020 kb on + strand, within MIT1002_00671 at 736.020 kb on + strand, within MIT1002_00671 at 736.094 kb on - strand, within MIT1002_00671 at 736.139 kb on + strand, within MIT1002_00671 at 736.161 kb on + strand, within MIT1002_00671 at 736.176 kb on + strand, within MIT1002_00671 at 736.177 kb on - strand, within MIT1002_00671 at 736.186 kb on + strand, within MIT1002_00671 at 736.186 kb on - strand, within MIT1002_00671 at 736.198 kb on + strand, within MIT1002_00671 at 736.237 kb on + strand, within MIT1002_00671 at 736.299 kb on - strand, within MIT1002_00671 at 736.321 kb on - strand, within MIT1002_00671 at 736.367 kb on - strand, within MIT1002_00671 at 736.421 kb on - strand, within MIT1002_00671 at 736.469 kb on - strand at 736.471 kb on + strand at 736.497 kb on - strand, within MIT1002_00672 at 736.553 kb on + strand, within MIT1002_00672 at 736.556 kb on - strand, within MIT1002_00672 at 736.561 kb on - strand, within MIT1002_00672 at 736.594 kb on + strand, within MIT1002_00672 at 736.602 kb on - strand, within MIT1002_00672 at 736.619 kb on + strand, within MIT1002_00672 at 736.619 kb on + strand, within MIT1002_00672 at 736.619 kb on + strand, within MIT1002_00672 at 736.619 kb on + strand, within MIT1002_00672 at 736.627 kb on - strand, within MIT1002_00672 at 736.627 kb on - strand, within MIT1002_00672 at 736.637 kb on - strand, within MIT1002_00672 at 736.643 kb on + strand, within MIT1002_00672 at 736.668 kb on - strand, within MIT1002_00672 at 736.699 kb on - strand, within MIT1002_00672 at 736.699 kb on - strand, within MIT1002_00672 at 736.730 kb on - strand, within MIT1002_00672 at 736.732 kb on - strand, within MIT1002_00672 at 736.732 kb on - strand, within MIT1002_00672 at 736.852 kb on + strand, within MIT1002_00672 at 736.898 kb on + strand at 736.898 kb on + strand at 736.906 kb on - strand at 736.910 kb on + strand at 737.043 kb on + strand, within MIT1002_00673 at 737.072 kb on - strand, within MIT1002_00673 at 737.086 kb on + strand, within MIT1002_00673 at 737.128 kb on - strand, within MIT1002_00673 at 737.138 kb on - strand, within MIT1002_00673 at 737.283 kb on - strand, within MIT1002_00673 at 737.283 kb on - strand, within MIT1002_00673 at 737.370 kb on - strand, within MIT1002_00673 at 737.384 kb on + strand, within MIT1002_00673 at 737.460 kb on + strand, within MIT1002_00673 at 737.468 kb on - strand, within MIT1002_00673
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5 remove 734,988 - MIT1002_00670 0.58 -0.0 735,030 + MIT1002_00670 0.61 +0.6 735,394 - MIT1002_00670 0.88 +0.6 735,614 - -0.3 735,627 + -0.2 735,795 + -0.5 735,822 + +0.2 735,910 + +1.6 735,910 + +0.1 735,910 + +2.2 735,918 - -0.6 735,918 - -0.1 735,993 - MIT1002_00671 0.21 +0.4 736,020 + MIT1002_00671 0.26 -0.6 736,020 + MIT1002_00671 0.26 -0.2 736,094 - MIT1002_00671 0.37 +1.9 736,139 + MIT1002_00671 0.44 +1.7 736,161 + MIT1002_00671 0.48 +0.7 736,176 + MIT1002_00671 0.50 -0.5 736,177 - MIT1002_00671 0.51 +0.3 736,186 + MIT1002_00671 0.52 +0.1 736,186 - MIT1002_00671 0.52 +0.8 736,198 + MIT1002_00671 0.54 +1.9 736,237 + MIT1002_00671 0.60 +0.6 736,299 - MIT1002_00671 0.70 -0.4 736,321 - MIT1002_00671 0.74 +0.5 736,367 - MIT1002_00671 0.81 +0.8 736,421 - MIT1002_00671 0.89 +1.3 736,469 - +0.5 736,471 + -1.3 736,497 - MIT1002_00672 0.13 -3.1 736,553 + MIT1002_00672 0.24 +0.4 736,556 - MIT1002_00672 0.25 -0.1 736,561 - MIT1002_00672 0.26 +0.7 736,594 + MIT1002_00672 0.33 -1.7 736,602 - MIT1002_00672 0.34 +0.5 736,619 + MIT1002_00672 0.38 -2.2 736,619 + MIT1002_00672 0.38 +0.4 736,619 + MIT1002_00672 0.38 -0.7 736,619 + MIT1002_00672 0.38 -1.7 736,627 - MIT1002_00672 0.39 +0.2 736,627 - MIT1002_00672 0.39 -1.7 736,637 - MIT1002_00672 0.41 -1.7 736,643 + MIT1002_00672 0.43 -1.0 736,668 - MIT1002_00672 0.48 -0.2 736,699 - MIT1002_00672 0.54 -0.0 736,699 - MIT1002_00672 0.54 +0.3 736,730 - MIT1002_00672 0.60 -1.7 736,732 - MIT1002_00672 0.61 -0.9 736,732 - MIT1002_00672 0.61 -1.2 736,852 + MIT1002_00672 0.85 -0.4 736,898 + -1.9 736,898 + -0.8 736,906 - -0.9 736,910 + +1.3 737,043 + MIT1002_00673 0.15 +0.4 737,072 - MIT1002_00673 0.19 -1.3 737,086 + MIT1002_00673 0.21 -2.1 737,128 - MIT1002_00673 0.26 -0.6 737,138 - MIT1002_00673 0.27 +0.2 737,283 - MIT1002_00673 0.45 -0.3 737,283 - MIT1002_00673 0.45 -1.9 737,370 - MIT1002_00673 0.56 +0.3 737,384 + MIT1002_00673 0.58 -1.8 737,460 + MIT1002_00673 0.67 +0.2 737,468 - MIT1002_00673 0.68 +0.4
Or see this region's nucleotide sequence