Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00591 and MIT1002_00592 overlap by 1 nucleotides MIT1002_00592 and MIT1002_00593 are separated by 8 nucleotides
MIT1002_00591: MIT1002_00591 - Type I restriction enzyme specificity protein MPN_089, at 638,123 to 639,379
_00591
MIT1002_00592: MIT1002_00592 - hypothetical protein, at 639,379 to 640,584
_00592
MIT1002_00593: MIT1002_00593 - Type I restriction enzyme EcoR124II R protein, at 640,593 to 643,706
_00593
Position (kb) 639
640
641 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 638.538 kb on + strand, within MIT1002_00591 at 638.538 kb on + strand, within MIT1002_00591 at 638.538 kb on + strand, within MIT1002_00591 at 638.556 kb on + strand, within MIT1002_00591 at 638.645 kb on - strand, within MIT1002_00591 at 638.702 kb on - strand, within MIT1002_00591 at 638.702 kb on - strand, within MIT1002_00591 at 638.702 kb on - strand, within MIT1002_00591 at 638.755 kb on + strand, within MIT1002_00591 at 638.755 kb on + strand, within MIT1002_00591 at 638.780 kb on + strand, within MIT1002_00591 at 638.882 kb on - strand, within MIT1002_00591 at 638.904 kb on - strand, within MIT1002_00591 at 638.988 kb on - strand, within MIT1002_00591 at 638.988 kb on - strand, within MIT1002_00591 at 639.027 kb on + strand, within MIT1002_00591 at 639.040 kb on - strand, within MIT1002_00591 at 639.062 kb on - strand, within MIT1002_00591 at 639.062 kb on - strand, within MIT1002_00591 at 639.264 kb on + strand at 639.287 kb on + strand at 639.287 kb on + strand at 639.389 kb on - strand at 639.442 kb on + strand at 639.471 kb on - strand at 639.471 kb on - strand at 639.723 kb on + strand, within MIT1002_00592 at 639.765 kb on + strand, within MIT1002_00592 at 639.780 kb on - strand, within MIT1002_00592 at 639.929 kb on - strand, within MIT1002_00592 at 640.060 kb on + strand, within MIT1002_00592 at 640.161 kb on + strand, within MIT1002_00592 at 640.169 kb on - strand, within MIT1002_00592 at 640.169 kb on - strand, within MIT1002_00592 at 640.211 kb on - strand, within MIT1002_00592 at 640.212 kb on + strand, within MIT1002_00592 at 640.240 kb on + strand, within MIT1002_00592 at 640.247 kb on + strand, within MIT1002_00592 at 640.248 kb on - strand, within MIT1002_00592 at 640.255 kb on - strand, within MIT1002_00592 at 640.268 kb on - strand, within MIT1002_00592 at 640.381 kb on - strand, within MIT1002_00592 at 640.399 kb on - strand, within MIT1002_00592 at 640.399 kb on - strand, within MIT1002_00592 at 640.419 kb on + strand, within MIT1002_00592 at 640.419 kb on + strand, within MIT1002_00592 at 640.425 kb on + strand, within MIT1002_00592 at 640.427 kb on - strand, within MIT1002_00592 at 640.433 kb on - strand, within MIT1002_00592 at 640.500 kb on + strand at 640.506 kb on - strand at 640.564 kb on + strand at 640.571 kb on + strand at 640.571 kb on + strand at 640.643 kb on - strand at 640.668 kb on + strand at 640.739 kb on - strand at 640.872 kb on - strand at 640.890 kb on + strand at 640.906 kb on - strand, within MIT1002_00593 at 640.907 kb on - strand, within MIT1002_00593 at 640.959 kb on - strand, within MIT1002_00593 at 641.026 kb on - strand, within MIT1002_00593 at 641.029 kb on + strand, within MIT1002_00593 at 641.201 kb on + strand, within MIT1002_00593 at 641.513 kb on + strand, within MIT1002_00593
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5 remove 638,538 + MIT1002_00591 0.33 -0.3 638,538 + MIT1002_00591 0.33 -0.2 638,538 + MIT1002_00591 0.33 +1.4 638,556 + MIT1002_00591 0.34 -1.1 638,645 - MIT1002_00591 0.42 +0.6 638,702 - MIT1002_00591 0.46 +0.2 638,702 - MIT1002_00591 0.46 -0.6 638,702 - MIT1002_00591 0.46 +0.1 638,755 + MIT1002_00591 0.50 -0.0 638,755 + MIT1002_00591 0.50 +0.8 638,780 + MIT1002_00591 0.52 -0.5 638,882 - MIT1002_00591 0.60 -0.4 638,904 - MIT1002_00591 0.62 +0.5 638,988 - MIT1002_00591 0.69 -2.3 638,988 - MIT1002_00591 0.69 +0.1 639,027 + MIT1002_00591 0.72 +1.1 639,040 - MIT1002_00591 0.73 -1.4 639,062 - MIT1002_00591 0.75 +0.3 639,062 - MIT1002_00591 0.75 +1.1 639,264 + -0.2 639,287 + -0.3 639,287 + -1.6 639,389 - -2.0 639,442 + +0.6 639,471 - +1.6 639,471 - +0.3 639,723 + MIT1002_00592 0.29 -3.1 639,765 + MIT1002_00592 0.32 -0.3 639,780 - MIT1002_00592 0.33 -0.5 639,929 - MIT1002_00592 0.46 -0.2 640,060 + MIT1002_00592 0.56 +0.8 640,161 + MIT1002_00592 0.65 +0.1 640,169 - MIT1002_00592 0.66 +0.3 640,169 - MIT1002_00592 0.66 -0.2 640,211 - MIT1002_00592 0.69 -0.3 640,212 + MIT1002_00592 0.69 -0.2 640,240 + MIT1002_00592 0.71 +0.0 640,247 + MIT1002_00592 0.72 +1.6 640,248 - MIT1002_00592 0.72 -0.1 640,255 - MIT1002_00592 0.73 -0.3 640,268 - MIT1002_00592 0.74 +0.2 640,381 - MIT1002_00592 0.83 +0.6 640,399 - MIT1002_00592 0.85 -0.4 640,399 - MIT1002_00592 0.85 -2.4 640,419 + MIT1002_00592 0.86 -0.3 640,419 + MIT1002_00592 0.86 +1.2 640,425 + MIT1002_00592 0.87 -1.0 640,427 - MIT1002_00592 0.87 +1.9 640,433 - MIT1002_00592 0.87 -0.3 640,500 + -0.7 640,506 - -0.9 640,564 + +0.6 640,571 + +0.6 640,571 + +0.0 640,643 - +1.0 640,668 + -0.6 640,739 - +2.2 640,872 - -0.8 640,890 + -0.2 640,906 - MIT1002_00593 0.10 -1.9 640,907 - MIT1002_00593 0.10 -0.3 640,959 - MIT1002_00593 0.12 -0.2 641,026 - MIT1002_00593 0.14 -0.4 641,029 + MIT1002_00593 0.14 -0.1 641,201 + MIT1002_00593 0.20 -1.3 641,513 + MIT1002_00593 0.30 -1.2
Or see this region's nucleotide sequence