Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00590

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00587 and MIT1002_00588 are separated by 11 nucleotidesMIT1002_00588 and MIT1002_00589 overlap by 4 nucleotidesMIT1002_00589 and MIT1002_00590 are separated by 82 nucleotidesMIT1002_00590 and MIT1002_00591 overlap by 4 nucleotides MIT1002_00587: MIT1002_00587 - hypothetical protein, at 634,732 to 635,598 _00587 MIT1002_00588: MIT1002_00588 - hypothetical protein, at 635,610 to 635,894 _00588 MIT1002_00589: MIT1002_00589 - hypothetical protein, at 635,891 to 636,463 _00589 MIT1002_00590: MIT1002_00590 - Type I restriction enzyme EcoKI M protein, at 636,546 to 638,126 _00590 MIT1002_00591: MIT1002_00591 - Type I restriction enzyme specificity protein MPN_089, at 638,123 to 639,379 _00591 Position (kb) 636 637 638 639Strain fitness (log2 ratio) -2 -1 0 1 2 3at 635.548 kb on + strandat 635.556 kb on - strandat 635.565 kb on + strandat 635.585 kb on + strandat 635.585 kb on + strandat 635.601 kb on - strandat 635.641 kb on - strand, within MIT1002_00588at 635.722 kb on + strand, within MIT1002_00588at 635.808 kb on + strand, within MIT1002_00588at 635.883 kb on + strandat 635.899 kb on + strandat 635.922 kb on - strandat 635.929 kb on + strandat 635.937 kb on - strandat 635.953 kb on - strand, within MIT1002_00589at 635.966 kb on + strand, within MIT1002_00589at 635.974 kb on - strand, within MIT1002_00589at 636.031 kb on + strand, within MIT1002_00589at 636.078 kb on - strand, within MIT1002_00589at 636.172 kb on + strand, within MIT1002_00589at 636.233 kb on + strand, within MIT1002_00589at 636.233 kb on + strand, within MIT1002_00589at 636.233 kb on + strand, within MIT1002_00589at 636.246 kb on - strand, within MIT1002_00589at 636.317 kb on + strand, within MIT1002_00589at 636.325 kb on - strand, within MIT1002_00589at 636.332 kb on + strand, within MIT1002_00589at 636.332 kb on + strand, within MIT1002_00589at 636.340 kb on - strand, within MIT1002_00589at 636.354 kb on - strand, within MIT1002_00589at 636.378 kb on - strand, within MIT1002_00589at 636.484 kb on + strandat 636.553 kb on + strandat 636.581 kb on - strandat 636.614 kb on - strandat 636.614 kb on - strandat 636.659 kb on + strandat 636.760 kb on - strand, within MIT1002_00590at 636.971 kb on + strand, within MIT1002_00590at 636.971 kb on + strand, within MIT1002_00590at 636.971 kb on + strand, within MIT1002_00590at 636.979 kb on - strand, within MIT1002_00590at 636.979 kb on - strand, within MIT1002_00590at 637.021 kb on + strand, within MIT1002_00590at 637.029 kb on + strand, within MIT1002_00590at 637.154 kb on - strand, within MIT1002_00590at 637.325 kb on - strand, within MIT1002_00590at 637.325 kb on - strand, within MIT1002_00590at 637.386 kb on + strand, within MIT1002_00590at 637.387 kb on + strand, within MIT1002_00590at 637.394 kb on - strand, within MIT1002_00590at 637.515 kb on - strand, within MIT1002_00590at 637.521 kb on + strand, within MIT1002_00590at 637.521 kb on + strand, within MIT1002_00590at 637.548 kb on + strand, within MIT1002_00590at 637.671 kb on - strand, within MIT1002_00590at 637.774 kb on + strand, within MIT1002_00590at 637.782 kb on - strand, within MIT1002_00590at 637.963 kb on + strand, within MIT1002_00590at 638.008 kb on - strandat 638.015 kb on + strandat 638.099 kb on + strandat 638.099 kb on + strandat 638.099 kb on + strandat 638.155 kb on + strandat 638.160 kb on + strandat 638.168 kb on - strandat 638.169 kb on - strandat 638.169 kb on - strandat 638.224 kb on + strandat 638.341 kb on - strand, within MIT1002_00591at 638.538 kb on + strand, within MIT1002_00591at 638.538 kb on + strand, within MIT1002_00591at 638.538 kb on + strand, within MIT1002_00591at 638.556 kb on + strand, within MIT1002_00591at 638.645 kb on - strand, within MIT1002_00591at 638.702 kb on - strand, within MIT1002_00591at 638.702 kb on - strand, within MIT1002_00591at 638.702 kb on - strand, within MIT1002_00591at 638.755 kb on + strand, within MIT1002_00591at 638.755 kb on + strand, within MIT1002_00591at 638.780 kb on + strand, within MIT1002_00591at 638.882 kb on - strand, within MIT1002_00591at 638.904 kb on - strand, within MIT1002_00591at 638.988 kb on - strand, within MIT1002_00591at 638.988 kb on - strand, within MIT1002_00591at 639.027 kb on + strand, within MIT1002_00591at 639.040 kb on - strand, within MIT1002_00591at 639.062 kb on - strand, within MIT1002_00591at 639.062 kb on - strand, within MIT1002_00591

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
remove
635,548 + +0.5
635,556 - -0.4
635,565 + +0.3
635,585 + -1.3
635,585 + +3.1
635,601 - -0.6
635,641 - MIT1002_00588 0.11 +1.5
635,722 + MIT1002_00588 0.39 +0.9
635,808 + MIT1002_00588 0.69 -1.5
635,883 + +2.0
635,899 + +1.0
635,922 - +0.1
635,929 + -0.4
635,937 - +1.4
635,953 - MIT1002_00589 0.11 -0.3
635,966 + MIT1002_00589 0.13 +0.9
635,974 - MIT1002_00589 0.14 -1.4
636,031 + MIT1002_00589 0.24 -0.1
636,078 - MIT1002_00589 0.33 +0.4
636,172 + MIT1002_00589 0.49 -2.2
636,233 + MIT1002_00589 0.60 -0.6
636,233 + MIT1002_00589 0.60 -0.6
636,233 + MIT1002_00589 0.60 -1.1
636,246 - MIT1002_00589 0.62 -0.0
636,317 + MIT1002_00589 0.74 -0.1
636,325 - MIT1002_00589 0.76 -0.4
636,332 + MIT1002_00589 0.77 -1.0
636,332 + MIT1002_00589 0.77 +0.9
636,340 - MIT1002_00589 0.78 +0.2
636,354 - MIT1002_00589 0.81 +0.3
636,378 - MIT1002_00589 0.85 +1.3
636,484 + +0.5
636,553 + -0.3
636,581 - +0.7
636,614 - -1.5
636,614 - +2.9
636,659 + -0.6
636,760 - MIT1002_00590 0.14 +0.8
636,971 + MIT1002_00590 0.27 +2.6
636,971 + MIT1002_00590 0.27 -1.1
636,971 + MIT1002_00590 0.27 +1.1
636,979 - MIT1002_00590 0.27 +0.4
636,979 - MIT1002_00590 0.27 +0.8
637,021 + MIT1002_00590 0.30 -0.5
637,029 + MIT1002_00590 0.31 -0.2
637,154 - MIT1002_00590 0.38 +1.1
637,325 - MIT1002_00590 0.49 +0.5
637,325 - MIT1002_00590 0.49 +0.8
637,386 + MIT1002_00590 0.53 +1.4
637,387 + MIT1002_00590 0.53 -0.3
637,394 - MIT1002_00590 0.54 +0.4
637,515 - MIT1002_00590 0.61 +0.1
637,521 + MIT1002_00590 0.62 -1.1
637,521 + MIT1002_00590 0.62 +0.8
637,548 + MIT1002_00590 0.63 -0.1
637,671 - MIT1002_00590 0.71 -0.6
637,774 + MIT1002_00590 0.78 +0.2
637,782 - MIT1002_00590 0.78 -0.2
637,963 + MIT1002_00590 0.90 +0.6
638,008 - +0.7
638,015 + +0.5
638,099 + +0.8
638,099 + +0.0
638,099 + +0.7
638,155 + -0.2
638,160 + +0.6
638,168 - -2.6
638,169 - -1.2
638,169 - +0.7
638,224 + -1.7
638,341 - MIT1002_00591 0.17 -0.5
638,538 + MIT1002_00591 0.33 -0.3
638,538 + MIT1002_00591 0.33 -0.2
638,538 + MIT1002_00591 0.33 +1.4
638,556 + MIT1002_00591 0.34 -1.1
638,645 - MIT1002_00591 0.42 +0.6
638,702 - MIT1002_00591 0.46 +0.2
638,702 - MIT1002_00591 0.46 -0.6
638,702 - MIT1002_00591 0.46 +0.1
638,755 + MIT1002_00591 0.50 -0.0
638,755 + MIT1002_00591 0.50 +0.8
638,780 + MIT1002_00591 0.52 -0.5
638,882 - MIT1002_00591 0.60 -0.4
638,904 - MIT1002_00591 0.62 +0.5
638,988 - MIT1002_00591 0.69 -2.3
638,988 - MIT1002_00591 0.69 +0.1
639,027 + MIT1002_00591 0.72 +1.1
639,040 - MIT1002_00591 0.73 -1.4
639,062 - MIT1002_00591 0.75 +0.3
639,062 - MIT1002_00591 0.75 +1.1

Or see this region's nucleotide sequence