Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00578

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00577 and MIT1002_00578 are separated by 280 nucleotidesMIT1002_00578 and MIT1002_00579 are separated by 111 nucleotides MIT1002_00577: MIT1002_00577 - Xaa-Pro dipeptidase, at 623,510 to 624,841 _00577 MIT1002_00578: MIT1002_00578 - ZIP Zinc transporter, at 625,122 to 625,838 _00578 MIT1002_00579: MIT1002_00579 - Octaprenyl-diphosphate synthase, at 625,950 to 626,930 _00579 Position (kb) 625 626Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 624.140 kb on + strand, within MIT1002_00577at 624.196 kb on + strand, within MIT1002_00577at 624.301 kb on - strand, within MIT1002_00577at 624.352 kb on - strand, within MIT1002_00577at 624.353 kb on + strand, within MIT1002_00577at 624.356 kb on - strand, within MIT1002_00577at 624.360 kb on + strand, within MIT1002_00577at 624.383 kb on + strand, within MIT1002_00577at 624.396 kb on - strand, within MIT1002_00577at 624.516 kb on + strand, within MIT1002_00577at 624.534 kb on + strand, within MIT1002_00577at 624.582 kb on + strand, within MIT1002_00577at 624.583 kb on + strand, within MIT1002_00577at 624.583 kb on + strand, within MIT1002_00577at 624.604 kb on - strand, within MIT1002_00577at 624.636 kb on + strand, within MIT1002_00577at 624.638 kb on - strand, within MIT1002_00577at 624.665 kb on + strand, within MIT1002_00577at 624.696 kb on + strand, within MIT1002_00577at 624.696 kb on + strand, within MIT1002_00577at 624.696 kb on + strand, within MIT1002_00577at 624.705 kb on - strand, within MIT1002_00577at 624.738 kb on + strandat 624.746 kb on - strandat 624.889 kb on + strandat 624.894 kb on + strandat 624.894 kb on + strandat 624.894 kb on + strandat 624.902 kb on - strandat 624.902 kb on - strandat 624.902 kb on - strandat 625.061 kb on + strandat 625.099 kb on - strandat 625.121 kb on - strandat 625.206 kb on + strand, within MIT1002_00578at 625.220 kb on + strand, within MIT1002_00578at 625.247 kb on - strand, within MIT1002_00578at 625.273 kb on - strand, within MIT1002_00578at 625.294 kb on + strand, within MIT1002_00578at 625.313 kb on - strand, within MIT1002_00578at 625.323 kb on - strand, within MIT1002_00578at 625.323 kb on - strand, within MIT1002_00578at 625.388 kb on - strand, within MIT1002_00578at 625.436 kb on + strand, within MIT1002_00578at 625.517 kb on - strand, within MIT1002_00578at 625.543 kb on + strand, within MIT1002_00578at 625.552 kb on - strand, within MIT1002_00578at 625.552 kb on - strand, within MIT1002_00578at 625.588 kb on + strand, within MIT1002_00578at 625.596 kb on - strand, within MIT1002_00578at 625.625 kb on + strand, within MIT1002_00578at 625.633 kb on - strand, within MIT1002_00578at 625.636 kb on + strand, within MIT1002_00578at 625.675 kb on + strand, within MIT1002_00578at 625.685 kb on - strand, within MIT1002_00578at 625.685 kb on - strand, within MIT1002_00578at 625.685 kb on - strand, within MIT1002_00578at 625.690 kb on + strand, within MIT1002_00578at 625.690 kb on + strand, within MIT1002_00578at 625.690 kb on + strand, within MIT1002_00578at 625.690 kb on + strand, within MIT1002_00578at 625.690 kb on + strand, within MIT1002_00578at 625.690 kb on + strand, within MIT1002_00578at 625.698 kb on - strand, within MIT1002_00578at 625.698 kb on - strand, within MIT1002_00578at 625.698 kb on - strand, within MIT1002_00578at 625.700 kb on - strand, within MIT1002_00578at 625.962 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
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624,140 + MIT1002_00577 0.47 +0.9
624,196 + MIT1002_00577 0.52 +0.2
624,301 - MIT1002_00577 0.59 +1.1
624,352 - MIT1002_00577 0.63 +0.0
624,353 + MIT1002_00577 0.63 +0.8
624,356 - MIT1002_00577 0.64 +0.8
624,360 + MIT1002_00577 0.64 +0.6
624,383 + MIT1002_00577 0.66 -0.6
624,396 - MIT1002_00577 0.67 -1.0
624,516 + MIT1002_00577 0.76 +0.5
624,534 + MIT1002_00577 0.77 +0.0
624,582 + MIT1002_00577 0.80 -1.1
624,583 + MIT1002_00577 0.81 +1.3
624,583 + MIT1002_00577 0.81 -3.1
624,604 - MIT1002_00577 0.82 +0.7
624,636 + MIT1002_00577 0.85 -1.4
624,638 - MIT1002_00577 0.85 +1.8
624,665 + MIT1002_00577 0.87 +0.7
624,696 + MIT1002_00577 0.89 +0.0
624,696 + MIT1002_00577 0.89 -0.1
624,696 + MIT1002_00577 0.89 +0.7
624,705 - MIT1002_00577 0.90 -1.0
624,738 + +0.0
624,746 - +2.6
624,889 + +2.1
624,894 + -0.0
624,894 + +1.0
624,894 + -0.3
624,902 - -1.5
624,902 - +0.4
624,902 - -0.1
625,061 + +1.2
625,099 - +0.3
625,121 - +1.2
625,206 + MIT1002_00578 0.12 -0.7
625,220 + MIT1002_00578 0.14 -1.7
625,247 - MIT1002_00578 0.17 +0.6
625,273 - MIT1002_00578 0.21 -0.2
625,294 + MIT1002_00578 0.24 +0.5
625,313 - MIT1002_00578 0.27 +0.4
625,323 - MIT1002_00578 0.28 -1.2
625,323 - MIT1002_00578 0.28 +1.3
625,388 - MIT1002_00578 0.37 +0.2
625,436 + MIT1002_00578 0.44 -0.4
625,517 - MIT1002_00578 0.55 +0.7
625,543 + MIT1002_00578 0.59 -1.1
625,552 - MIT1002_00578 0.60 +1.6
625,552 - MIT1002_00578 0.60 +0.5
625,588 + MIT1002_00578 0.65 +0.5
625,596 - MIT1002_00578 0.66 +0.1
625,625 + MIT1002_00578 0.70 +0.6
625,633 - MIT1002_00578 0.71 -0.1
625,636 + MIT1002_00578 0.72 +1.3
625,675 + MIT1002_00578 0.77 +1.4
625,685 - MIT1002_00578 0.79 -0.2
625,685 - MIT1002_00578 0.79 -0.2
625,685 - MIT1002_00578 0.79 +2.3
625,690 + MIT1002_00578 0.79 +1.3
625,690 + MIT1002_00578 0.79 -0.3
625,690 + MIT1002_00578 0.79 +0.4
625,690 + MIT1002_00578 0.79 -1.4
625,690 + MIT1002_00578 0.79 -3.5
625,690 + MIT1002_00578 0.79 +0.3
625,698 - MIT1002_00578 0.80 +0.0
625,698 - MIT1002_00578 0.80 -1.3
625,698 - MIT1002_00578 0.80 -0.2
625,700 - MIT1002_00578 0.81 +0.6
625,962 - -3.5

Or see this region's nucleotide sequence