Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00500 and MIT1002_00501 are separated by 147 nucleotides MIT1002_00501 and MIT1002_00502 are separated by 233 nucleotides MIT1002_00502 and MIT1002_00503 are separated by 273 nucleotides
MIT1002_00500: MIT1002_00500 - putative PEP-CTERM system TPR-repeat lipoprotein, at 543,882 to 545,450
_00500
MIT1002_00501: MIT1002_00501 - hypothetical protein, at 545,598 to 546,059
_00501
MIT1002_00502: MIT1002_00502 - Protein of unknown function, DUF, at 546,293 to 546,670
_00502
MIT1002_00503: MIT1002_00503 - Acetolactate synthase isozyme 3 large subunit, at 546,944 to 548,662
_00503
Position (kb) 545
546
547 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2 at 544.643 kb on + strand, within MIT1002_00500 at 544.676 kb on + strand, within MIT1002_00500 at 544.684 kb on - strand, within MIT1002_00500 at 544.756 kb on - strand, within MIT1002_00500 at 544.761 kb on - strand, within MIT1002_00500 at 544.761 kb on - strand, within MIT1002_00500 at 544.833 kb on + strand, within MIT1002_00500 at 544.839 kb on + strand, within MIT1002_00500 at 544.839 kb on - strand, within MIT1002_00500 at 544.841 kb on - strand, within MIT1002_00500 at 544.845 kb on + strand, within MIT1002_00500 at 544.896 kb on + strand, within MIT1002_00500 at 544.925 kb on + strand, within MIT1002_00500 at 544.967 kb on + strand, within MIT1002_00500 at 545.093 kb on + strand, within MIT1002_00500 at 545.110 kb on + strand, within MIT1002_00500 at 545.134 kb on + strand, within MIT1002_00500 at 545.135 kb on - strand, within MIT1002_00500 at 545.142 kb on - strand, within MIT1002_00500 at 545.164 kb on + strand, within MIT1002_00500 at 545.172 kb on - strand, within MIT1002_00500 at 545.172 kb on - strand, within MIT1002_00500 at 545.288 kb on + strand, within MIT1002_00500 at 545.296 kb on - strand at 545.296 kb on - strand at 545.416 kb on + strand at 545.477 kb on - strand at 545.669 kb on + strand, within MIT1002_00501 at 545.780 kb on - strand, within MIT1002_00501 at 545.801 kb on - strand, within MIT1002_00501 at 545.837 kb on - strand, within MIT1002_00501 at 545.993 kb on + strand, within MIT1002_00501 at 545.998 kb on - strand, within MIT1002_00501 at 546.036 kb on - strand at 546.106 kb on + strand at 546.179 kb on + strand at 546.285 kb on + strand at 546.286 kb on + strand at 546.287 kb on + strand at 546.295 kb on - strand at 546.295 kb on - strand at 546.402 kb on - strand, within MIT1002_00502 at 546.417 kb on - strand, within MIT1002_00502 at 546.510 kb on + strand, within MIT1002_00502 at 546.510 kb on - strand, within MIT1002_00502 at 546.523 kb on + strand, within MIT1002_00502 at 546.610 kb on - strand, within MIT1002_00502 at 546.671 kb on + strand at 546.892 kb on - strand at 546.903 kb on - strand at 546.915 kb on + strand at 546.917 kb on + strand at 546.932 kb on + strand at 546.965 kb on + strand at 547.020 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5 remove 544,643 + MIT1002_00500 0.49 -1.0 544,676 + MIT1002_00500 0.51 +0.8 544,684 - MIT1002_00500 0.51 -1.3 544,756 - MIT1002_00500 0.56 +0.1 544,761 - MIT1002_00500 0.56 -0.1 544,761 - MIT1002_00500 0.56 +0.1 544,833 + MIT1002_00500 0.61 -0.6 544,839 + MIT1002_00500 0.61 -0.4 544,839 - MIT1002_00500 0.61 -1.3 544,841 - MIT1002_00500 0.61 -0.6 544,845 + MIT1002_00500 0.61 +0.1 544,896 + MIT1002_00500 0.65 -1.0 544,925 + MIT1002_00500 0.66 -1.2 544,967 + MIT1002_00500 0.69 +2.2 545,093 + MIT1002_00500 0.77 -0.6 545,110 + MIT1002_00500 0.78 +0.8 545,134 + MIT1002_00500 0.80 -0.1 545,135 - MIT1002_00500 0.80 +0.6 545,142 - MIT1002_00500 0.80 -1.3 545,164 + MIT1002_00500 0.82 -0.4 545,172 - MIT1002_00500 0.82 -0.3 545,172 - MIT1002_00500 0.82 -0.2 545,288 + MIT1002_00500 0.90 +0.2 545,296 - -0.3 545,296 - -0.1 545,416 + +0.6 545,477 - +0.7 545,669 + MIT1002_00501 0.15 +0.5 545,780 - MIT1002_00501 0.39 +0.8 545,801 - MIT1002_00501 0.44 +1.4 545,837 - MIT1002_00501 0.52 +0.5 545,993 + MIT1002_00501 0.85 +0.7 545,998 - MIT1002_00501 0.87 +0.2 546,036 - -2.3 546,106 + +0.3 546,179 + +1.1 546,285 + -2.0 546,286 + +1.2 546,287 + +0.4 546,295 - +0.5 546,295 - +1.1 546,402 - MIT1002_00502 0.29 +0.5 546,417 - MIT1002_00502 0.33 -0.3 546,510 + MIT1002_00502 0.57 +1.7 546,510 - MIT1002_00502 0.57 -0.2 546,523 + MIT1002_00502 0.61 +0.5 546,610 - MIT1002_00502 0.84 -0.3 546,671 + +0.0 546,892 - -1.1 546,903 - -1.5 546,915 + -3.5 546,917 + -3.2 546,932 + -2.2 546,965 + -4.1 547,020 - -6.9
Or see this region's nucleotide sequence