Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00485

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00483 and MIT1002_00484 are separated by 159 nucleotidesMIT1002_00484 and MIT1002_00485 are separated by 90 nucleotidesMIT1002_00485 and MIT1002_00486 are separated by 10 nucleotidesMIT1002_00486 and MIT1002_00487 are separated by 62 nucleotidesMIT1002_00487 and MIT1002_00488 are separated by 12 nucleotides MIT1002_00483: MIT1002_00483 - Outer membrane protein OprM precursor, at 528,405 to 529,814 _00483 MIT1002_00484: MIT1002_00484 - hypothetical protein, at 529,974 to 530,366 _00484 MIT1002_00485: MIT1002_00485 - Glycerol-3-phosphate dehydrogenase [NAD(P)+], at 530,457 to 531,488 _00485 MIT1002_00486: MIT1002_00486 - Protein-export protein SecB, at 531,499 to 532,008 _00486 MIT1002_00487: MIT1002_00487 - Glutaredoxin-3, at 532,071 to 532,331 _00487 MIT1002_00488: MIT1002_00488 - Thiosulfate sulfurtransferase GlpE, at 532,344 to 532,769 _00488 Position (kb) 530 531 532Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 529.466 kb on + strand, within MIT1002_00483at 529.466 kb on + strand, within MIT1002_00483at 529.466 kb on + strand, within MIT1002_00483at 529.473 kb on - strand, within MIT1002_00483at 529.484 kb on - strand, within MIT1002_00483at 529.527 kb on - strand, within MIT1002_00483at 529.604 kb on + strand, within MIT1002_00483at 529.634 kb on + strand, within MIT1002_00483at 529.642 kb on + strand, within MIT1002_00483at 529.706 kb on - strandat 529.750 kb on - strandat 529.752 kb on + strandat 529.780 kb on + strandat 529.792 kb on - strandat 529.794 kb on + strandat 529.848 kb on + strandat 529.887 kb on + strandat 529.890 kb on - strandat 529.895 kb on - strandat 529.902 kb on + strandat 529.927 kb on + strandat 529.935 kb on - strandat 529.969 kb on + strandat 530.135 kb on - strand, within MIT1002_00484at 530.172 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.225 kb on - strand, within MIT1002_00484at 530.249 kb on - strand, within MIT1002_00484at 530.264 kb on + strand, within MIT1002_00484at 530.308 kb on - strand, within MIT1002_00484at 530.332 kb on + strandat 530.332 kb on + strandat 530.375 kb on - strandat 530.450 kb on + strandat 530.460 kb on - strandat 530.467 kb on + strandat 530.523 kb on + strandat 530.531 kb on - strandat 530.541 kb on - strandat 530.541 kb on - strandat 530.613 kb on - strand, within MIT1002_00485at 530.623 kb on + strand, within MIT1002_00485at 530.785 kb on + strand, within MIT1002_00485at 530.795 kb on - strand, within MIT1002_00485at 530.853 kb on + strand, within MIT1002_00485at 530.861 kb on - strand, within MIT1002_00485at 530.941 kb on - strand, within MIT1002_00485at 530.950 kb on - strand, within MIT1002_00485at 530.950 kb on - strand, within MIT1002_00485at 530.960 kb on - strand, within MIT1002_00485at 531.015 kb on + strand, within MIT1002_00485at 531.015 kb on + strand, within MIT1002_00485at 531.023 kb on - strand, within MIT1002_00485at 531.023 kb on - strand, within MIT1002_00485at 531.097 kb on + strand, within MIT1002_00485at 531.166 kb on + strand, within MIT1002_00485at 531.179 kb on + strand, within MIT1002_00485at 531.197 kb on - strand, within MIT1002_00485at 531.219 kb on - strand, within MIT1002_00485at 531.283 kb on - strand, within MIT1002_00485at 531.336 kb on + strand, within MIT1002_00485at 531.364 kb on + strand, within MIT1002_00485at 531.374 kb on + strand, within MIT1002_00485at 531.382 kb on - strand, within MIT1002_00485at 531.387 kb on - strandat 531.419 kb on + strandat 531.481 kb on + strandat 531.489 kb on - strandat 531.518 kb on + strandat 531.598 kb on - strand, within MIT1002_00486at 532.061 kb on - strandat 532.109 kb on - strand, within MIT1002_00487at 532.222 kb on - strand, within MIT1002_00487at 532.222 kb on - strand, within MIT1002_00487at 532.222 kb on - strand, within MIT1002_00487at 532.222 kb on - strand, within MIT1002_00487at 532.324 kb on - strandat 532.369 kb on - strandat 532.369 kb on - strandat 532.461 kb on - strand, within MIT1002_00488

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
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529,466 + MIT1002_00483 0.75 +0.6
529,466 + MIT1002_00483 0.75 -0.7
529,466 + MIT1002_00483 0.75 -2.0
529,473 - MIT1002_00483 0.76 +0.6
529,484 - MIT1002_00483 0.77 -1.9
529,527 - MIT1002_00483 0.80 +0.4
529,604 + MIT1002_00483 0.85 +0.1
529,634 + MIT1002_00483 0.87 -0.7
529,642 + MIT1002_00483 0.88 -0.2
529,706 - -2.5
529,750 - -0.5
529,752 + +1.3
529,780 + -0.1
529,792 - +0.0
529,794 + -0.9
529,848 + +1.5
529,887 + +0.1
529,890 - +0.3
529,895 - -1.5
529,902 + +1.6
529,927 + -1.7
529,935 - +0.6
529,969 + +0.5
530,135 - MIT1002_00484 0.41 -0.4
530,172 + MIT1002_00484 0.50 -0.4
530,182 + MIT1002_00484 0.53 +0.6
530,182 + MIT1002_00484 0.53 -0.5
530,182 + MIT1002_00484 0.53 +1.1
530,182 + MIT1002_00484 0.53 +0.0
530,182 + MIT1002_00484 0.53 -0.9
530,182 + MIT1002_00484 0.53 +0.2
530,182 + MIT1002_00484 0.53 +0.4
530,182 + MIT1002_00484 0.53 +0.6
530,182 + MIT1002_00484 0.53 -0.6
530,182 + MIT1002_00484 0.53 -0.0
530,182 + MIT1002_00484 0.53 -0.5
530,182 + MIT1002_00484 0.53 -1.3
530,190 - MIT1002_00484 0.55 +0.2
530,190 - MIT1002_00484 0.55 -0.5
530,190 - MIT1002_00484 0.55 -1.0
530,190 - MIT1002_00484 0.55 -1.3
530,190 - MIT1002_00484 0.55 -2.3
530,190 - MIT1002_00484 0.55 -0.6
530,190 - MIT1002_00484 0.55 -0.5
530,190 - MIT1002_00484 0.55 -0.0
530,190 - MIT1002_00484 0.55 -0.5
530,190 - MIT1002_00484 0.55 -2.0
530,190 - MIT1002_00484 0.55 -0.4
530,190 - MIT1002_00484 0.55 +0.5
530,190 - MIT1002_00484 0.55 -0.2
530,190 - MIT1002_00484 0.55 -0.7
530,190 - MIT1002_00484 0.55 -0.5
530,190 - MIT1002_00484 0.55 +2.0
530,190 - MIT1002_00484 0.55 +0.8
530,225 - MIT1002_00484 0.64 -0.2
530,249 - MIT1002_00484 0.70 +0.4
530,264 + MIT1002_00484 0.74 -2.0
530,308 - MIT1002_00484 0.85 +0.1
530,332 + +1.3
530,332 + +1.4
530,375 - -0.9
530,450 + -2.8
530,460 - -1.3
530,467 + -4.5
530,523 + -2.7
530,531 - -2.4
530,541 - -2.0
530,541 - -0.6
530,613 - MIT1002_00485 0.15 +0.6
530,623 + MIT1002_00485 0.16 -2.9
530,785 + MIT1002_00485 0.32 -1.5
530,795 - MIT1002_00485 0.33 -3.5
530,853 + MIT1002_00485 0.38 +0.6
530,861 - MIT1002_00485 0.39 -4.0
530,941 - MIT1002_00485 0.47 -2.9
530,950 - MIT1002_00485 0.48 -3.0
530,950 - MIT1002_00485 0.48 -4.2
530,960 - MIT1002_00485 0.49 -1.5
531,015 + MIT1002_00485 0.54 -3.0
531,015 + MIT1002_00485 0.54 -3.8
531,023 - MIT1002_00485 0.55 -3.3
531,023 - MIT1002_00485 0.55 -2.3
531,097 + MIT1002_00485 0.62 -4.1
531,166 + MIT1002_00485 0.69 -1.5
531,179 + MIT1002_00485 0.70 -3.1
531,197 - MIT1002_00485 0.72 -3.4
531,219 - MIT1002_00485 0.74 -0.9
531,283 - MIT1002_00485 0.80 -2.0
531,336 + MIT1002_00485 0.85 -2.1
531,364 + MIT1002_00485 0.88 -1.3
531,374 + MIT1002_00485 0.89 -2.5
531,382 - MIT1002_00485 0.90 -6.1
531,387 - -3.9
531,419 + -2.4
531,481 + -3.8
531,489 - -3.6
531,518 + -2.7
531,598 - MIT1002_00486 0.19 -2.9
532,061 - +0.6
532,109 - MIT1002_00487 0.15 -1.4
532,222 - MIT1002_00487 0.58 -0.5
532,222 - MIT1002_00487 0.58 -0.6
532,222 - MIT1002_00487 0.58 -0.2
532,222 - MIT1002_00487 0.58 -0.1
532,324 - -0.3
532,369 - -1.4
532,369 - +0.9
532,461 - MIT1002_00488 0.27 +1.2

Or see this region's nucleotide sequence