Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00452

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00450 and MIT1002_00451 overlap by 4 nucleotidesMIT1002_00451 and MIT1002_00452 are separated by 2 nucleotidesMIT1002_00452 and MIT1002_00453 overlap by 13 nucleotides MIT1002_00450: MIT1002_00450 - Pilus assembly protein, PilP, at 492,104 to 492,631 _00450 MIT1002_00451: MIT1002_00451 - Pilus assembly protein, PilO, at 492,628 to 493,239 _00451 MIT1002_00452: MIT1002_00452 - Fimbrial assembly protein (PilN), at 493,242 to 493,820 _00452 MIT1002_00453: MIT1002_00453 - type IV pilus assembly protein PilM, at 493,808 to 494,875 _00453 Position (kb) 493 494Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 492.291 kb on + strand, within MIT1002_00450at 492.303 kb on + strand, within MIT1002_00450at 492.304 kb on - strand, within MIT1002_00450at 492.328 kb on + strand, within MIT1002_00450at 492.328 kb on + strand, within MIT1002_00450at 492.328 kb on + strand, within MIT1002_00450at 492.328 kb on + strand, within MIT1002_00450at 492.328 kb on + strand, within MIT1002_00450at 492.328 kb on + strand, within MIT1002_00450at 492.328 kb on + strand, within MIT1002_00450at 492.336 kb on - strand, within MIT1002_00450at 492.336 kb on - strand, within MIT1002_00450at 492.336 kb on - strand, within MIT1002_00450at 492.336 kb on - strand, within MIT1002_00450at 492.371 kb on - strand, within MIT1002_00450at 492.426 kb on + strand, within MIT1002_00450at 492.484 kb on - strand, within MIT1002_00450at 492.484 kb on - strand, within MIT1002_00450at 492.535 kb on + strand, within MIT1002_00450at 492.535 kb on + strand, within MIT1002_00450at 492.535 kb on + strand, within MIT1002_00450at 492.535 kb on + strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.547 kb on + strand, within MIT1002_00450at 492.547 kb on + strand, within MIT1002_00450at 492.547 kb on + strand, within MIT1002_00450at 492.547 kb on + strand, within MIT1002_00450at 492.547 kb on + strand, within MIT1002_00450at 492.547 kb on + strand, within MIT1002_00450at 492.547 kb on + strand, within MIT1002_00450at 492.547 kb on + strand, within MIT1002_00450at 492.547 kb on + strand, within MIT1002_00450at 492.554 kb on + strand, within MIT1002_00450at 492.555 kb on - strand, within MIT1002_00450at 492.555 kb on - strand, within MIT1002_00450at 492.555 kb on - strand, within MIT1002_00450at 492.555 kb on - strand, within MIT1002_00450at 492.555 kb on - strand, within MIT1002_00450at 492.555 kb on - strand, within MIT1002_00450at 492.555 kb on - strand, within MIT1002_00450at 492.555 kb on - strand, within MIT1002_00450at 492.555 kb on - strand, within MIT1002_00450at 492.555 kb on - strand, within MIT1002_00450at 492.555 kb on - strand, within MIT1002_00450at 492.555 kb on - strand, within MIT1002_00450at 492.555 kb on - strand, within MIT1002_00450at 492.562 kb on - strand, within MIT1002_00450at 492.569 kb on + strand, within MIT1002_00450at 492.610 kb on - strandat 492.649 kb on - strandat 492.649 kb on - strandat 492.715 kb on - strand, within MIT1002_00451at 492.743 kb on - strand, within MIT1002_00451at 492.748 kb on + strand, within MIT1002_00451at 492.756 kb on - strand, within MIT1002_00451at 492.756 kb on - strand, within MIT1002_00451at 492.756 kb on - strand, within MIT1002_00451at 492.756 kb on - strand, within MIT1002_00451at 492.795 kb on - strand, within MIT1002_00451at 492.816 kb on - strand, within MIT1002_00451at 492.874 kb on + strand, within MIT1002_00451at 492.875 kb on - strand, within MIT1002_00451at 492.879 kb on + strand, within MIT1002_00451at 492.879 kb on + strand, within MIT1002_00451at 492.947 kb on + strand, within MIT1002_00451at 492.957 kb on - strand, within MIT1002_00451at 492.959 kb on + strand, within MIT1002_00451at 493.019 kb on + strand, within MIT1002_00451at 493.045 kb on + strand, within MIT1002_00451at 493.109 kb on + strand, within MIT1002_00451at 493.124 kb on + strand, within MIT1002_00451at 493.126 kb on + strand, within MIT1002_00451at 493.287 kb on - strandat 493.287 kb on - strandat 493.288 kb on - strandat 493.288 kb on - strandat 493.288 kb on - strandat 493.342 kb on + strand, within MIT1002_00452at 493.479 kb on - strand, within MIT1002_00452at 493.487 kb on - strand, within MIT1002_00452at 493.517 kb on + strand, within MIT1002_00452at 493.556 kb on - strand, within MIT1002_00452at 493.574 kb on + strand, within MIT1002_00452at 493.739 kb on + strand, within MIT1002_00452at 493.766 kb on - strandat 493.830 kb on - strandat 493.846 kb on - strandat 493.854 kb on + strandat 493.904 kb on - strandat 493.935 kb on - strand, within MIT1002_00453at 493.943 kb on + strand, within MIT1002_00453at 494.160 kb on - strand, within MIT1002_00453at 494.170 kb on - strand, within MIT1002_00453at 494.206 kb on + strand, within MIT1002_00453at 494.220 kb on - strand, within MIT1002_00453at 494.287 kb on + strand, within MIT1002_00453at 494.295 kb on - strand, within MIT1002_00453at 494.295 kb on - strand, within MIT1002_00453at 494.295 kb on - strand, within MIT1002_00453at 494.295 kb on - strand, within MIT1002_00453at 494.336 kb on + strand, within MIT1002_00453at 494.418 kb on - strand, within MIT1002_00453at 494.530 kb on + strand, within MIT1002_00453at 494.584 kb on + strand, within MIT1002_00453at 494.584 kb on + strand, within MIT1002_00453at 494.710 kb on + strand, within MIT1002_00453at 494.756 kb on + strand, within MIT1002_00453at 494.756 kb on + strand, within MIT1002_00453at 494.756 kb on + strand, within MIT1002_00453at 494.764 kb on - strand, within MIT1002_00453at 494.764 kb on - strand, within MIT1002_00453at 494.770 kb on - strandat 494.791 kb on + strandat 494.791 kb on + strandat 494.791 kb on + strandat 494.791 kb on + strandat 494.791 kb on + strandat 494.799 kb on - strandat 494.799 kb on - strandat 494.799 kb on - strandat 494.799 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
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492,291 + MIT1002_00450 0.35 +0.6
492,303 + MIT1002_00450 0.38 -2.4
492,304 - MIT1002_00450 0.38 -0.7
492,328 + MIT1002_00450 0.42 -0.2
492,328 + MIT1002_00450 0.42 +0.1
492,328 + MIT1002_00450 0.42 +0.1
492,328 + MIT1002_00450 0.42 -1.4
492,328 + MIT1002_00450 0.42 +0.1
492,328 + MIT1002_00450 0.42 +0.8
492,328 + MIT1002_00450 0.42 -2.6
492,336 - MIT1002_00450 0.44 -0.8
492,336 - MIT1002_00450 0.44 +0.6
492,336 - MIT1002_00450 0.44 +0.0
492,336 - MIT1002_00450 0.44 +0.1
492,371 - MIT1002_00450 0.51 +0.6
492,426 + MIT1002_00450 0.61 -0.4
492,484 - MIT1002_00450 0.72 +0.1
492,484 - MIT1002_00450 0.72 -0.7
492,535 + MIT1002_00450 0.82 -0.2
492,535 + MIT1002_00450 0.82 +1.1
492,535 + MIT1002_00450 0.82 -0.9
492,535 + MIT1002_00450 0.82 -0.3
492,543 - MIT1002_00450 0.83 -1.0
492,543 - MIT1002_00450 0.83 -0.1
492,543 - MIT1002_00450 0.83 -1.3
492,543 - MIT1002_00450 0.83 +1.8
492,543 - MIT1002_00450 0.83 +1.0
492,543 - MIT1002_00450 0.83 -1.1
492,543 - MIT1002_00450 0.83 -1.0
492,543 - MIT1002_00450 0.83 -1.4
492,543 - MIT1002_00450 0.83 -0.8
492,543 - MIT1002_00450 0.83 +1.5
492,543 - MIT1002_00450 0.83 -0.9
492,543 - MIT1002_00450 0.83 +0.3
492,543 - MIT1002_00450 0.83 -1.1
492,543 - MIT1002_00450 0.83 -0.9
492,543 - MIT1002_00450 0.83 -0.2
492,543 - MIT1002_00450 0.83 +0.3
492,543 - MIT1002_00450 0.83 -1.9
492,543 - MIT1002_00450 0.83 +0.3
492,543 - MIT1002_00450 0.83 +0.7
492,547 + MIT1002_00450 0.84 -0.2
492,547 + MIT1002_00450 0.84 -4.1
492,547 + MIT1002_00450 0.84 +0.0
492,547 + MIT1002_00450 0.84 +1.9
492,547 + MIT1002_00450 0.84 -1.5
492,547 + MIT1002_00450 0.84 +1.3
492,547 + MIT1002_00450 0.84 +0.6
492,547 + MIT1002_00450 0.84 -1.5
492,547 + MIT1002_00450 0.84 -1.3
492,554 + MIT1002_00450 0.85 -0.7
492,555 - MIT1002_00450 0.85 +0.4
492,555 - MIT1002_00450 0.85 +0.3
492,555 - MIT1002_00450 0.85 +1.4
492,555 - MIT1002_00450 0.85 +0.2
492,555 - MIT1002_00450 0.85 -0.9
492,555 - MIT1002_00450 0.85 +0.0
492,555 - MIT1002_00450 0.85 +1.0
492,555 - MIT1002_00450 0.85 +0.2
492,555 - MIT1002_00450 0.85 +0.0
492,555 - MIT1002_00450 0.85 +2.2
492,555 - MIT1002_00450 0.85 -1.5
492,555 - MIT1002_00450 0.85 -0.8
492,555 - MIT1002_00450 0.85 +2.0
492,562 - MIT1002_00450 0.87 +0.8
492,569 + MIT1002_00450 0.88 +0.8
492,610 - +1.2
492,649 - -1.3
492,649 - -0.6
492,715 - MIT1002_00451 0.14 -1.0
492,743 - MIT1002_00451 0.19 +0.6
492,748 + MIT1002_00451 0.20 +2.9
492,756 - MIT1002_00451 0.21 -1.4
492,756 - MIT1002_00451 0.21 +0.5
492,756 - MIT1002_00451 0.21 -0.3
492,756 - MIT1002_00451 0.21 -0.1
492,795 - MIT1002_00451 0.27 +0.6
492,816 - MIT1002_00451 0.31 -0.9
492,874 + MIT1002_00451 0.40 -0.1
492,875 - MIT1002_00451 0.40 -1.3
492,879 + MIT1002_00451 0.41 +1.2
492,879 + MIT1002_00451 0.41 -1.4
492,947 + MIT1002_00451 0.52 -0.6
492,957 - MIT1002_00451 0.54 -0.8
492,959 + MIT1002_00451 0.54 +0.6
493,019 + MIT1002_00451 0.64 -2.3
493,045 + MIT1002_00451 0.68 +0.0
493,109 + MIT1002_00451 0.79 -0.1
493,124 + MIT1002_00451 0.81 -1.4
493,126 + MIT1002_00451 0.81 -0.3
493,287 - -0.3
493,287 - -1.0
493,288 - -1.6
493,288 - -2.6
493,288 - +2.1
493,342 + MIT1002_00452 0.17 +0.2
493,479 - MIT1002_00452 0.41 -0.1
493,487 - MIT1002_00452 0.42 +1.5
493,517 + MIT1002_00452 0.47 +1.9
493,556 - MIT1002_00452 0.54 +1.2
493,574 + MIT1002_00452 0.57 -2.7
493,739 + MIT1002_00452 0.86 +0.6
493,766 - -0.4
493,830 - -0.3
493,846 - -0.2
493,854 + +0.0
493,904 - +0.4
493,935 - MIT1002_00453 0.12 -2.2
493,943 + MIT1002_00453 0.13 -0.3
494,160 - MIT1002_00453 0.33 -0.6
494,170 - MIT1002_00453 0.34 -0.1
494,206 + MIT1002_00453 0.37 -0.7
494,220 - MIT1002_00453 0.39 +1.1
494,287 + MIT1002_00453 0.45 +3.7
494,295 - MIT1002_00453 0.46 -0.5
494,295 - MIT1002_00453 0.46 +0.0
494,295 - MIT1002_00453 0.46 -0.5
494,295 - MIT1002_00453 0.46 +0.4
494,336 + MIT1002_00453 0.49 -1.8
494,418 - MIT1002_00453 0.57 +1.0
494,530 + MIT1002_00453 0.68 +1.0
494,584 + MIT1002_00453 0.73 -1.3
494,584 + MIT1002_00453 0.73 +0.1
494,710 + MIT1002_00453 0.84 +0.1
494,756 + MIT1002_00453 0.89 +1.2
494,756 + MIT1002_00453 0.89 +0.3
494,756 + MIT1002_00453 0.89 -0.0
494,764 - MIT1002_00453 0.90 -0.2
494,764 - MIT1002_00453 0.90 +0.1
494,770 - +0.6
494,791 + -0.4
494,791 + +0.3
494,791 + -1.5
494,791 + -0.1
494,791 + +0.3
494,799 - -1.9
494,799 - -0.3
494,799 - -1.4
494,799 - -2.1

Or see this region's nucleotide sequence