Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00417

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00415 and MIT1002_00416 are separated by 242 nucleotidesMIT1002_00416 and MIT1002_00417 are separated by 32 nucleotidesMIT1002_00417 and MIT1002_00418 are separated by 167 nucleotides MIT1002_00415: MIT1002_00415 - hypothetical protein, at 447,999 to 448,853 _00415 MIT1002_00416: MIT1002_00416 - Nitrogen regulatory protein P-II 2, at 449,096 to 449,434 _00416 MIT1002_00417: MIT1002_00417 - Ammonia transporter, at 449,467 to 450,714 _00417 MIT1002_00418: MIT1002_00418 - hypothetical protein, at 450,882 to 452,210 _00418 Position (kb) 449 450 451Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 448.512 kb on - strand, within MIT1002_00415at 448.569 kb on - strand, within MIT1002_00415at 448.569 kb on - strand, within MIT1002_00415at 448.574 kb on - strand, within MIT1002_00415at 448.579 kb on + strand, within MIT1002_00415at 448.579 kb on - strand, within MIT1002_00415at 448.579 kb on - strand, within MIT1002_00415at 448.579 kb on - strand, within MIT1002_00415at 448.586 kb on + strand, within MIT1002_00415at 448.678 kb on + strand, within MIT1002_00415at 448.706 kb on + strand, within MIT1002_00415at 448.706 kb on + strand, within MIT1002_00415at 448.706 kb on + strand, within MIT1002_00415at 448.706 kb on - strand, within MIT1002_00415at 448.709 kb on - strand, within MIT1002_00415at 448.714 kb on - strand, within MIT1002_00415at 448.714 kb on - strand, within MIT1002_00415at 448.714 kb on - strand, within MIT1002_00415at 448.714 kb on - strand, within MIT1002_00415at 448.714 kb on - strand, within MIT1002_00415at 448.766 kb on + strand, within MIT1002_00415at 448.766 kb on + strand, within MIT1002_00415at 448.774 kb on - strandat 448.779 kb on - strandat 448.821 kb on + strandat 448.826 kb on - strandat 448.878 kb on + strandat 448.878 kb on + strandat 448.878 kb on + strandat 448.886 kb on - strandat 448.886 kb on - strandat 448.886 kb on - strandat 448.886 kb on - strandat 448.896 kb on + strandat 448.937 kb on + strandat 449.124 kb on - strandat 449.133 kb on - strand, within MIT1002_00416at 449.192 kb on + strand, within MIT1002_00416at 449.207 kb on - strand, within MIT1002_00416at 449.207 kb on - strand, within MIT1002_00416at 449.322 kb on - strand, within MIT1002_00416at 449.379 kb on + strand, within MIT1002_00416at 449.379 kb on + strand, within MIT1002_00416at 449.379 kb on + strand, within MIT1002_00416at 449.380 kb on - strand, within MIT1002_00416at 449.387 kb on - strand, within MIT1002_00416at 449.393 kb on + strand, within MIT1002_00416at 449.429 kb on + strandat 449.429 kb on + strandat 449.429 kb on + strandat 449.437 kb on - strandat 449.532 kb on + strandat 449.535 kb on - strandat 449.570 kb on - strandat 449.572 kb on + strandat 449.572 kb on + strandat 449.572 kb on + strandat 449.572 kb on + strandat 449.580 kb on - strandat 449.580 kb on - strandat 449.580 kb on - strandat 449.625 kb on + strand, within MIT1002_00417at 449.642 kb on - strand, within MIT1002_00417at 449.642 kb on - strand, within MIT1002_00417at 449.644 kb on + strand, within MIT1002_00417at 449.671 kb on + strand, within MIT1002_00417at 449.731 kb on - strand, within MIT1002_00417at 449.793 kb on - strand, within MIT1002_00417at 449.852 kb on - strand, within MIT1002_00417at 449.854 kb on + strand, within MIT1002_00417at 449.889 kb on - strand, within MIT1002_00417at 449.905 kb on + strand, within MIT1002_00417at 449.940 kb on + strand, within MIT1002_00417at 449.948 kb on - strand, within MIT1002_00417at 449.989 kb on + strand, within MIT1002_00417at 450.031 kb on - strand, within MIT1002_00417at 450.057 kb on - strand, within MIT1002_00417at 450.057 kb on - strand, within MIT1002_00417at 450.074 kb on - strand, within MIT1002_00417at 450.102 kb on - strand, within MIT1002_00417at 450.127 kb on - strand, within MIT1002_00417at 450.140 kb on + strand, within MIT1002_00417at 450.158 kb on + strand, within MIT1002_00417at 450.158 kb on + strand, within MIT1002_00417at 450.163 kb on + strand, within MIT1002_00417at 450.163 kb on + strand, within MIT1002_00417at 450.163 kb on + strand, within MIT1002_00417at 450.163 kb on + strand, within MIT1002_00417at 450.171 kb on - strand, within MIT1002_00417at 450.171 kb on - strand, within MIT1002_00417at 450.171 kb on - strand, within MIT1002_00417at 450.171 kb on - strand, within MIT1002_00417at 450.263 kb on - strand, within MIT1002_00417at 450.297 kb on - strand, within MIT1002_00417at 450.298 kb on - strand, within MIT1002_00417at 450.303 kb on + strand, within MIT1002_00417at 450.311 kb on - strand, within MIT1002_00417at 450.353 kb on - strand, within MIT1002_00417at 450.354 kb on + strand, within MIT1002_00417at 450.362 kb on - strand, within MIT1002_00417at 450.376 kb on - strand, within MIT1002_00417at 450.421 kb on + strand, within MIT1002_00417at 450.432 kb on + strand, within MIT1002_00417at 450.491 kb on + strand, within MIT1002_00417at 450.498 kb on - strand, within MIT1002_00417at 450.499 kb on - strand, within MIT1002_00417at 450.499 kb on - strand, within MIT1002_00417at 450.499 kb on - strand, within MIT1002_00417at 450.584 kb on + strand, within MIT1002_00417at 450.618 kb on + strandat 450.620 kb on + strandat 450.628 kb on - strandat 450.628 kb on - strandat 450.628 kb on - strandat 450.628 kb on - strandat 450.653 kb on + strandat 450.653 kb on + strandat 450.653 kb on + strandat 450.661 kb on - strandat 450.661 kb on - strandat 450.661 kb on - strandat 450.661 kb on - strandat 450.668 kb on + strandat 450.693 kb on - strandat 450.709 kb on + strandat 450.798 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
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448,512 - MIT1002_00415 0.60 -0.2
448,569 - MIT1002_00415 0.67 +0.4
448,569 - MIT1002_00415 0.67 +0.4
448,574 - MIT1002_00415 0.67 +0.3
448,579 + MIT1002_00415 0.68 -0.1
448,579 - MIT1002_00415 0.68 -0.0
448,579 - MIT1002_00415 0.68 -0.1
448,579 - MIT1002_00415 0.68 -0.3
448,586 + MIT1002_00415 0.69 -0.9
448,678 + MIT1002_00415 0.79 -1.8
448,706 + MIT1002_00415 0.83 -1.1
448,706 + MIT1002_00415 0.83 +0.9
448,706 + MIT1002_00415 0.83 +1.4
448,706 - MIT1002_00415 0.83 -1.1
448,709 - MIT1002_00415 0.83 +1.0
448,714 - MIT1002_00415 0.84 -0.1
448,714 - MIT1002_00415 0.84 +1.5
448,714 - MIT1002_00415 0.84 +0.1
448,714 - MIT1002_00415 0.84 -0.0
448,714 - MIT1002_00415 0.84 +2.3
448,766 + MIT1002_00415 0.90 +1.9
448,766 + MIT1002_00415 0.90 +1.4
448,774 - -1.2
448,779 - +0.1
448,821 + +0.3
448,826 - +1.3
448,878 + +1.4
448,878 + -0.4
448,878 + +0.0
448,886 - +1.3
448,886 - +0.5
448,886 - +1.0
448,886 - +1.2
448,896 + -0.8
448,937 + -1.6
449,124 - -1.6
449,133 - MIT1002_00416 0.11 +0.1
449,192 + MIT1002_00416 0.28 -0.8
449,207 - MIT1002_00416 0.33 +1.4
449,207 - MIT1002_00416 0.33 -0.6
449,322 - MIT1002_00416 0.67 +0.2
449,379 + MIT1002_00416 0.83 +1.2
449,379 + MIT1002_00416 0.83 -0.6
449,379 + MIT1002_00416 0.83 -1.3
449,380 - MIT1002_00416 0.84 -0.0
449,387 - MIT1002_00416 0.86 +0.5
449,393 + MIT1002_00416 0.88 -1.3
449,429 + -0.7
449,429 + -0.8
449,429 + -0.3
449,437 - -1.9
449,532 + -0.6
449,535 - +1.2
449,570 - +0.6
449,572 + -0.4
449,572 + -0.2
449,572 + +1.0
449,572 + -0.8
449,580 - -0.4
449,580 - +0.4
449,580 - -1.1
449,625 + MIT1002_00417 0.13 +0.2
449,642 - MIT1002_00417 0.14 -0.5
449,642 - MIT1002_00417 0.14 +0.6
449,644 + MIT1002_00417 0.14 -1.0
449,671 + MIT1002_00417 0.16 +0.6
449,731 - MIT1002_00417 0.21 -0.8
449,793 - MIT1002_00417 0.26 +0.3
449,852 - MIT1002_00417 0.31 -0.8
449,854 + MIT1002_00417 0.31 -1.8
449,889 - MIT1002_00417 0.34 -0.2
449,905 + MIT1002_00417 0.35 +1.2
449,940 + MIT1002_00417 0.38 -0.2
449,948 - MIT1002_00417 0.39 +0.2
449,989 + MIT1002_00417 0.42 -0.0
450,031 - MIT1002_00417 0.45 -0.8
450,057 - MIT1002_00417 0.47 +0.5
450,057 - MIT1002_00417 0.47 -0.6
450,074 - MIT1002_00417 0.49 -1.0
450,102 - MIT1002_00417 0.51 +0.6
450,127 - MIT1002_00417 0.53 -0.3
450,140 + MIT1002_00417 0.54 -0.1
450,158 + MIT1002_00417 0.55 +0.5
450,158 + MIT1002_00417 0.55 +0.0
450,163 + MIT1002_00417 0.56 +0.6
450,163 + MIT1002_00417 0.56 +2.3
450,163 + MIT1002_00417 0.56 -0.2
450,163 + MIT1002_00417 0.56 +0.4
450,171 - MIT1002_00417 0.56 -2.6
450,171 - MIT1002_00417 0.56 +0.7
450,171 - MIT1002_00417 0.56 -0.2
450,171 - MIT1002_00417 0.56 -1.0
450,263 - MIT1002_00417 0.64 +0.1
450,297 - MIT1002_00417 0.67 -0.3
450,298 - MIT1002_00417 0.67 +0.0
450,303 + MIT1002_00417 0.67 +1.2
450,311 - MIT1002_00417 0.68 -0.5
450,353 - MIT1002_00417 0.71 +0.3
450,354 + MIT1002_00417 0.71 -0.8
450,362 - MIT1002_00417 0.72 +1.4
450,376 - MIT1002_00417 0.73 +1.4
450,421 + MIT1002_00417 0.76 -0.4
450,432 + MIT1002_00417 0.77 +0.3
450,491 + MIT1002_00417 0.82 -2.3
450,498 - MIT1002_00417 0.83 -0.7
450,499 - MIT1002_00417 0.83 -0.3
450,499 - MIT1002_00417 0.83 +0.7
450,499 - MIT1002_00417 0.83 +0.9
450,584 + MIT1002_00417 0.90 -3.2
450,618 + -1.6
450,620 + +2.0
450,628 - -1.6
450,628 - +1.5
450,628 - +1.2
450,628 - +0.5
450,653 + -1.5
450,653 + +0.9
450,653 + +1.6
450,661 - +2.3
450,661 - +1.4
450,661 - -1.0
450,661 - -0.3
450,668 + -0.6
450,693 - -1.7
450,709 + -0.0
450,798 - +0.6

Or see this region's nucleotide sequence