Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00377 and MIT1002_00378 are separated by 66 nucleotides MIT1002_00378 and MIT1002_00379 are separated by 177 nucleotides MIT1002_00379 and MIT1002_00380 are separated by 488 nucleotides
MIT1002_00377: MIT1002_00377 - Branched-chain-amino-acid aminotransferase 2, at 407,473 to 408,474
_00377
MIT1002_00378: MIT1002_00378 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase, at 408,541 to 409,287
_00378
MIT1002_00379: MIT1002_00379 - hypothetical protein, at 409,465 to 409,926
_00379
MIT1002_00380: MIT1002_00380 - Aconitate hydratase 1, at 410,415 to 413,132
_00380
Position (kb) 409
410 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 408.554 kb on - strand at 409.405 kb on + strand at 409.428 kb on + strand at 409.436 kb on - strand at 409.482 kb on + strand at 409.491 kb on - strand at 409.542 kb on - strand, within MIT1002_00379 at 409.571 kb on - strand, within MIT1002_00379 at 409.573 kb on + strand, within MIT1002_00379 at 409.581 kb on - strand, within MIT1002_00379 at 409.598 kb on - strand, within MIT1002_00379 at 409.648 kb on + strand, within MIT1002_00379 at 409.670 kb on + strand, within MIT1002_00379 at 409.726 kb on + strand, within MIT1002_00379 at 409.760 kb on + strand, within MIT1002_00379 at 409.765 kb on + strand, within MIT1002_00379 at 409.890 kb on + strand at 409.895 kb on + strand at 409.903 kb on + strand at 409.903 kb on - strand at 409.917 kb on + strand at 409.964 kb on - strand at 409.964 kb on - strand at 409.981 kb on - strand at 409.981 kb on - strand at 410.029 kb on - strand at 410.097 kb on + strand at 410.105 kb on - strand at 410.137 kb on + strand at 410.154 kb on - strand at 410.228 kb on + strand at 410.271 kb on + strand at 410.407 kb on - strand at 410.467 kb on - strand at 410.476 kb on - strand at 410.567 kb on - strand at 410.567 kb on - strand at 410.576 kb on - strand at 410.595 kb on + strand at 410.603 kb on + strand at 410.644 kb on - strand at 410.703 kb on + strand, within MIT1002_00380
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5 remove 408,554 - -0.6 409,405 + +0.3 409,428 + -0.0 409,436 - +0.9 409,482 + -0.9 409,491 - -0.2 409,542 - MIT1002_00379 0.17 -0.3 409,571 - MIT1002_00379 0.23 +2.9 409,573 + MIT1002_00379 0.23 +2.0 409,581 - MIT1002_00379 0.25 +0.6 409,598 - MIT1002_00379 0.29 +0.9 409,648 + MIT1002_00379 0.40 +0.7 409,670 + MIT1002_00379 0.44 -2.6 409,726 + MIT1002_00379 0.56 -0.7 409,760 + MIT1002_00379 0.64 +1.1 409,765 + MIT1002_00379 0.65 +0.8 409,890 + +0.7 409,895 + +1.2 409,903 + -0.7 409,903 - -1.8 409,917 + +1.2 409,964 - +1.4 409,964 - +0.9 409,981 - +1.3 409,981 - -1.0 410,029 - -0.2 410,097 + -1.3 410,105 - +0.7 410,137 + -0.9 410,154 - -0.4 410,228 + -1.4 410,271 + -0.1 410,407 - +0.6 410,467 - +1.0 410,476 - +0.2 410,567 - +1.9 410,567 - +1.4 410,576 - -2.7 410,595 + +0.1 410,603 + +0.2 410,644 - +1.2 410,703 + MIT1002_00380 0.11 +0.1
Or see this region's nucleotide sequence