Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00339 and MIT1002_00340 are separated by 80 nucleotides MIT1002_00340 and MIT1002_00341 are separated by 234 nucleotides MIT1002_00341 and MIT1002_00342 overlap by 8 nucleotides
MIT1002_00339: MIT1002_00339 - Copper resistance protein A precursor, at 363,429 to 365,243
_00339
MIT1002_00340: MIT1002_00340 - hypothetical protein, at 365,324 to 365,674
_00340
MIT1002_00341: MIT1002_00341 - glutaredoxin 3, at 365,909 to 366,640
_00341
MIT1002_00342: MIT1002_00342 - hypothetical protein, at 366,633 to 367,163
_00342
Position (kb) 365
366 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 364.330 kb on - strand, within MIT1002_00339 at 364.381 kb on - strand, within MIT1002_00339 at 364.444 kb on + strand, within MIT1002_00339 at 364.444 kb on + strand, within MIT1002_00339 at 364.444 kb on + strand, within MIT1002_00339 at 364.452 kb on - strand, within MIT1002_00339 at 364.452 kb on - strand, within MIT1002_00339 at 364.452 kb on - strand, within MIT1002_00339 at 364.452 kb on - strand, within MIT1002_00339 at 364.467 kb on + strand, within MIT1002_00339 at 364.475 kb on - strand, within MIT1002_00339 at 364.535 kb on + strand, within MIT1002_00339 at 364.539 kb on + strand, within MIT1002_00339 at 364.568 kb on + strand, within MIT1002_00339 at 364.568 kb on + strand, within MIT1002_00339 at 364.604 kb on + strand, within MIT1002_00339 at 364.676 kb on + strand, within MIT1002_00339 at 364.676 kb on + strand, within MIT1002_00339 at 364.722 kb on + strand, within MIT1002_00339 at 364.740 kb on - strand, within MIT1002_00339 at 364.769 kb on + strand, within MIT1002_00339 at 364.779 kb on + strand, within MIT1002_00339 at 364.779 kb on + strand, within MIT1002_00339 at 364.787 kb on - strand, within MIT1002_00339 at 364.868 kb on + strand, within MIT1002_00339 at 364.868 kb on + strand, within MIT1002_00339 at 364.943 kb on - strand, within MIT1002_00339 at 365.048 kb on - strand, within MIT1002_00339 at 365.141 kb on - strand at 365.146 kb on + strand at 365.149 kb on - strand at 365.149 kb on - strand at 365.166 kb on + strand at 365.190 kb on + strand at 365.198 kb on - strand at 365.212 kb on - strand at 365.393 kb on - strand, within MIT1002_00340 at 365.527 kb on - strand, within MIT1002_00340 at 365.529 kb on - strand, within MIT1002_00340 at 365.529 kb on - strand, within MIT1002_00340 at 365.545 kb on + strand, within MIT1002_00340 at 365.576 kb on - strand, within MIT1002_00340 at 365.708 kb on + strand at 365.744 kb on + strand at 365.768 kb on + strand at 365.771 kb on - strand at 365.972 kb on + strand at 365.988 kb on - strand, within MIT1002_00341 at 365.993 kb on - strand, within MIT1002_00341 at 366.016 kb on + strand, within MIT1002_00341 at 366.017 kb on - strand, within MIT1002_00341 at 366.077 kb on - strand, within MIT1002_00341 at 366.122 kb on + strand, within MIT1002_00341 at 366.125 kb on - strand, within MIT1002_00341 at 366.137 kb on + strand, within MIT1002_00341 at 366.150 kb on + strand, within MIT1002_00341 at 366.163 kb on - strand, within MIT1002_00341 at 366.229 kb on - strand, within MIT1002_00341 at 366.267 kb on + strand, within MIT1002_00341 at 366.327 kb on + strand, within MIT1002_00341 at 366.381 kb on + strand, within MIT1002_00341 at 366.435 kb on - strand, within MIT1002_00341 at 366.439 kb on - strand, within MIT1002_00341 at 366.461 kb on + strand, within MIT1002_00341 at 366.469 kb on - strand, within MIT1002_00341 at 366.533 kb on + strand, within MIT1002_00341 at 366.576 kb on - strand at 366.588 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5 remove 364,330 - MIT1002_00339 0.50 -2.7 364,381 - MIT1002_00339 0.52 +0.2 364,444 + MIT1002_00339 0.56 -0.4 364,444 + MIT1002_00339 0.56 +0.6 364,444 + MIT1002_00339 0.56 -0.1 364,452 - MIT1002_00339 0.56 -2.4 364,452 - MIT1002_00339 0.56 +0.5 364,452 - MIT1002_00339 0.56 -0.3 364,452 - MIT1002_00339 0.56 -0.6 364,467 + MIT1002_00339 0.57 +1.0 364,475 - MIT1002_00339 0.58 +0.4 364,535 + MIT1002_00339 0.61 +0.3 364,539 + MIT1002_00339 0.61 +0.0 364,568 + MIT1002_00339 0.63 -0.5 364,568 + MIT1002_00339 0.63 -1.3 364,604 + MIT1002_00339 0.65 -1.1 364,676 + MIT1002_00339 0.69 +0.1 364,676 + MIT1002_00339 0.69 +1.7 364,722 + MIT1002_00339 0.71 -1.4 364,740 - MIT1002_00339 0.72 +1.0 364,769 + MIT1002_00339 0.74 +0.9 364,779 + MIT1002_00339 0.74 -1.3 364,779 + MIT1002_00339 0.74 -0.5 364,787 - MIT1002_00339 0.75 -0.3 364,868 + MIT1002_00339 0.79 -0.9 364,868 + MIT1002_00339 0.79 -0.4 364,943 - MIT1002_00339 0.83 -0.9 365,048 - MIT1002_00339 0.89 +0.1 365,141 - +0.2 365,146 + +0.5 365,149 - +0.5 365,149 - +0.7 365,166 + -0.2 365,190 + +0.0 365,198 - +1.0 365,212 - +0.6 365,393 - MIT1002_00340 0.20 -0.6 365,527 - MIT1002_00340 0.58 +0.0 365,529 - MIT1002_00340 0.58 +0.0 365,529 - MIT1002_00340 0.58 -0.6 365,545 + MIT1002_00340 0.63 +0.6 365,576 - MIT1002_00340 0.72 -2.9 365,708 + -0.1 365,744 + -0.4 365,768 + +0.5 365,771 - +0.6 365,972 + +1.2 365,988 - MIT1002_00341 0.11 +0.6 365,993 - MIT1002_00341 0.11 -1.4 366,016 + MIT1002_00341 0.15 +0.1 366,017 - MIT1002_00341 0.15 -0.9 366,077 - MIT1002_00341 0.23 +0.9 366,122 + MIT1002_00341 0.29 +0.9 366,125 - MIT1002_00341 0.30 +0.2 366,137 + MIT1002_00341 0.31 +0.6 366,150 + MIT1002_00341 0.33 -1.2 366,163 - MIT1002_00341 0.35 +0.2 366,229 - MIT1002_00341 0.44 -2.4 366,267 + MIT1002_00341 0.49 +0.4 366,327 + MIT1002_00341 0.57 -1.5 366,381 + MIT1002_00341 0.64 -1.5 366,435 - MIT1002_00341 0.72 -1.1 366,439 - MIT1002_00341 0.72 -0.6 366,461 + MIT1002_00341 0.75 +0.2 366,469 - MIT1002_00341 0.77 +0.2 366,533 + MIT1002_00341 0.85 +0.3 366,576 - -0.1 366,588 + -0.2
Or see this region's nucleotide sequence