Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00331 and MIT1002_00332 are separated by 8 nucleotides MIT1002_00332 and MIT1002_00333 overlap by 8 nucleotides MIT1002_00333 and MIT1002_00334 overlap by 17 nucleotides MIT1002_00334 and MIT1002_00335 are separated by 17 nucleotides MIT1002_00335 and MIT1002_00336 are separated by 446 nucleotides
MIT1002_00331: MIT1002_00331 - hypothetical protein, at 358,291 to 358,644
_00331
MIT1002_00332: MIT1002_00332 - hypothetical protein, at 358,653 to 358,991
_00332
MIT1002_00333: MIT1002_00333 - Putative protein-S-isoprenylcysteine methyltransferase, at 358,984 to 359,649
_00333
MIT1002_00334: MIT1002_00334 - hypothetical protein, at 359,633 to 360,043
_00334
MIT1002_00335: MIT1002_00335 - hypothetical protein, at 360,061 to 360,432
_00335
MIT1002_00336: MIT1002_00336 - hypothetical protein, at 360,879 to 361,034
_00336
Position (kb) 359
360
361 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 358.645 kb on - strand at 358.648 kb on - strand at 358.686 kb on + strand at 358.686 kb on + strand at 358.694 kb on - strand, within MIT1002_00332 at 358.709 kb on - strand, within MIT1002_00332 at 358.843 kb on - strand, within MIT1002_00332 at 358.931 kb on + strand, within MIT1002_00332 at 358.939 kb on + strand, within MIT1002_00332 at 358.958 kb on - strand at 358.973 kb on + strand at 358.999 kb on + strand at 359.005 kb on + strand at 359.012 kb on + strand at 359.140 kb on + strand, within MIT1002_00333 at 359.140 kb on + strand, within MIT1002_00333 at 359.185 kb on + strand, within MIT1002_00333 at 359.323 kb on + strand, within MIT1002_00333 at 359.344 kb on + strand, within MIT1002_00333 at 359.352 kb on - strand, within MIT1002_00333 at 359.352 kb on - strand, within MIT1002_00333 at 359.352 kb on - strand, within MIT1002_00333 at 359.402 kb on + strand, within MIT1002_00333 at 359.478 kb on + strand, within MIT1002_00333 at 359.478 kb on + strand, within MIT1002_00333 at 359.533 kb on + strand, within MIT1002_00333 at 359.541 kb on - strand, within MIT1002_00333 at 359.558 kb on + strand, within MIT1002_00333 at 359.588 kb on - strand at 359.727 kb on - strand, within MIT1002_00334 at 359.758 kb on + strand, within MIT1002_00334 at 359.766 kb on - strand, within MIT1002_00334 at 359.935 kb on - strand, within MIT1002_00334 at 360.075 kb on + strand at 360.167 kb on + strand, within MIT1002_00335 at 360.207 kb on - strand, within MIT1002_00335 at 360.220 kb on + strand, within MIT1002_00335 at 360.239 kb on - strand, within MIT1002_00335 at 360.271 kb on - strand, within MIT1002_00335 at 360.288 kb on + strand, within MIT1002_00335 at 360.340 kb on - strand, within MIT1002_00335 at 360.423 kb on + strand at 360.431 kb on - strand at 360.433 kb on + strand at 360.440 kb on - strand at 360.440 kb on - strand at 360.440 kb on - strand at 360.440 kb on - strand at 360.440 kb on - strand at 360.440 kb on - strand at 360.440 kb on - strand at 360.442 kb on + strand at 360.450 kb on - strand at 360.532 kb on + strand at 360.558 kb on + strand at 360.558 kb on + strand at 360.566 kb on - strand at 360.678 kb on - strand at 360.678 kb on - strand at 360.692 kb on + strand at 360.699 kb on + strand at 360.728 kb on + strand at 360.730 kb on + strand at 360.746 kb on - strand at 360.774 kb on + strand at 360.787 kb on - strand at 360.830 kb on - strand at 360.874 kb on + strand at 360.929 kb on - strand, within MIT1002_00336 at 360.945 kb on - strand, within MIT1002_00336 at 360.948 kb on - strand, within MIT1002_00336 at 360.953 kb on + strand, within MIT1002_00336 at 360.955 kb on + strand, within MIT1002_00336 at 361.009 kb on + strand, within MIT1002_00336 at 361.030 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5 remove 358,645 - +0.8 358,648 - +0.4 358,686 + -0.8 358,686 + -0.4 358,694 - MIT1002_00332 0.12 +0.4 358,709 - MIT1002_00332 0.17 +0.5 358,843 - MIT1002_00332 0.56 +0.3 358,931 + MIT1002_00332 0.82 +0.0 358,939 + MIT1002_00332 0.84 -0.2 358,958 - -1.1 358,973 + +0.5 358,999 + -1.6 359,005 + +0.9 359,012 + -0.6 359,140 + MIT1002_00333 0.23 -1.9 359,140 + MIT1002_00333 0.23 +0.5 359,185 + MIT1002_00333 0.30 +0.3 359,323 + MIT1002_00333 0.51 +1.8 359,344 + MIT1002_00333 0.54 +0.3 359,352 - MIT1002_00333 0.55 +0.0 359,352 - MIT1002_00333 0.55 +0.4 359,352 - MIT1002_00333 0.55 -0.2 359,402 + MIT1002_00333 0.63 +1.4 359,478 + MIT1002_00333 0.74 +0.3 359,478 + MIT1002_00333 0.74 -0.5 359,533 + MIT1002_00333 0.82 +1.0 359,541 - MIT1002_00333 0.84 +4.1 359,558 + MIT1002_00333 0.86 -0.7 359,588 - +0.1 359,727 - MIT1002_00334 0.23 +2.2 359,758 + MIT1002_00334 0.30 +1.4 359,766 - MIT1002_00334 0.32 +1.2 359,935 - MIT1002_00334 0.73 +0.3 360,075 + -0.3 360,167 + MIT1002_00335 0.28 -0.4 360,207 - MIT1002_00335 0.39 -0.4 360,220 + MIT1002_00335 0.43 +0.6 360,239 - MIT1002_00335 0.48 -1.0 360,271 - MIT1002_00335 0.56 +0.3 360,288 + MIT1002_00335 0.61 -1.1 360,340 - MIT1002_00335 0.75 -0.9 360,423 + -1.4 360,431 - +1.0 360,433 + -2.3 360,440 - -0.5 360,440 - -0.4 360,440 - -1.6 360,440 - -2.3 360,440 - -2.5 360,440 - -0.1 360,440 - +1.8 360,442 + -0.8 360,450 - -0.7 360,532 + -1.1 360,558 + +0.3 360,558 + -1.1 360,566 - -1.5 360,678 - -0.1 360,678 - -0.1 360,692 + +1.4 360,699 + -0.1 360,728 + +0.7 360,730 + -0.2 360,746 - -2.0 360,774 + +0.2 360,787 - +0.3 360,830 - +1.6 360,874 + -1.3 360,929 - MIT1002_00336 0.32 +2.3 360,945 - MIT1002_00336 0.42 +0.0 360,948 - MIT1002_00336 0.44 +0.0 360,953 + MIT1002_00336 0.47 -1.9 360,955 + MIT1002_00336 0.49 +0.8 361,009 + MIT1002_00336 0.83 -0.7 361,030 + +0.0
Or see this region's nucleotide sequence